Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00101 ATGCAAACGTCTCAGAAACACGCAAGTTCGGCTGGTGTACACTTCTATCGCCACCAGCCTGTGCAAGGCATCTACCACGTTTTGCAGAGCGATCTATGCCATGATGCCCGTCATAGCAGCAGCCAGGAAACAAGCTTTTCTTTTGAAAGCTGCAAGGAGCAATACTTCACTCTGGAATCATGCCCTGCACCAACTACCGGTTTCACGGAGTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGAGTCCATTTTCTCCACAAGGTTCTCATTCGTGCTATTCGGATCACCACCAATCCTCTGACAACACCTATGGATCGCCAATAAGCGGTTTGTCTAGCGTTGACGATGGGCATGAACTGAAGCACAAACTCAGAGAACTGGAGATTTCATTGTTGGGGCCTGACGAATCGGACATCGAAGACAGTTTTGGCTGCTGCGTCAAGGGCAGCAGACTCGACGGAGCATCTCAGCTGGCTAAGCATAACTGGGAGCAGATTGCTGAAAATATTTCACGATTTGACCTGAAAGGAGTCCTCAGGGTATGTGCGCAGGCCGTGTCCGATGAAGATGTTCCAACAGCAAGAGGGTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGAGATCCGATTCAGAGGTTGGGTGCTTACTTGTTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGCATCTCATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCAAAGAACTACTGAGTTACATGCACATCCTGTACCAGATTTGTCCATACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATTACAGAAGCTATGGCTAACGAGTCCAGGATTCATATAATGGATTTCCAAATAGCACAGGGCACACAGTGGTATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCTTCCCTTCGCGTGACCGGTGTTGATGATTCGCATTCGATTCAAGCTCGAGGTGGAGGACTTGAGATTGTAGGAGAAAGGTTGTCAGAATTTGCGAGGTCTTGTGGAGTTCCGTTTGAATTTCACACTGCTGCAATGTCTGGCTGTGAGGTTGTGCGAGGAAGTATTGAAATTAGACCCGGGGAAGCTCTGGCAGTAAATTTTCCTTTTGTTTTGCACCACATGGCAGATGAGAGCGTGAGCACTGAGAATCACAGAGATAGATTGTTGAGGTTGGTTAAGAGCTTATCTCCCAAGGTTGTCACCCTTGTGGAGCAAGAATCCAACACCAATACATCTCCTTTCTTTTACAGGTTTCTTGAGACCTTGGATTACTATACTGCCATGTTTGAATCCATTGATGTGGCTTGCCCCAGAGATGATCAGAAGCGCGTGAGCGCAGAGCAGCACTGTGTGGCACGAGACATTGTCAACATGATAGCTTGTGAGGGGGCTGAGAGAGTTGAAAGGCATGAACTTTTGGGAAAGTGGAGGTCAAGACTTTCCATGGCTGGATTTAAACAGTGCCAATTGAGCTCTTCTGTCATCGTTGCTACCCAAAATCTCCTAAACGACTTCAGTCAAAATTATAGGCTTGAACATAAAGACGATGCCCTTTATCTTGGTTGGATGAACAGACACATGGCTACCTCTTCTGCTTGGAGGTGA 1650 0.4697 MQTSQKHASSAGVHFYRHQPVQGIYHVLQSDLCHDARHSSSQETSFSFESCKEQYFTLESCPAPTTGFTECDDSPSYASVSSKRSPFSPQGSHSCYSDHHQSSDNTYGSPISGLSSVDDGHELKHKLRELEISLLGPDESDIEDSFGCCVKGSRLDGASQLAKHNWEQIAENISRFDLKGVLRVCAQAVSDEDVPTARGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGHLIYKSLKCEQPTSKELLSYMHILYQICPYWKFAYISANAVITEAMANESRIHIMDFQIAQGTQWYLLIQALAHRPGGPPSLRVTGVDDSHSIQARGGGLEIVGERLSEFARSCGVPFEFHTAAMSGCEVVRGSIEIRPGEALAVNFPFVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFYRFLETLDYYTAMFESIDVACPRDDQKRVSAEQHCVARDIVNMIACEGAERVERHELLGKWRSRLSMAGFKQCQLSSSVIVATQNLLNDFSQNYRLEHKDDALYLGWMNRHMATSSAWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00101 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Vian1g00101 549 MobiDBLite consensus disorder prediction 79 113 - -
Vian1g00101 549 Pfam GRAS domain family 181 549 IPR005202 -
Vian1g00101 549 MobiDBLite consensus disorder prediction 79 115 - -
Vian1g00101 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 539 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00101 Vian-Chr1 927689 929338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00101 1 549 GRAS Transcription Factor Family AT4G17230 58.727 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian1g00101 GRAS 1.8e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00101 - - gmx:100792931 979.163