Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00092 ATGTCTATGATTGAAACCCCCGCCGTCCACCACCTCAGCGGGGGCGCCACCGATCATCACCGTCACTCGTCTAAACGCAAACTCGACGAAGAAGATGACGGAGATTTCTCGGACTTAGTCTGTGTGAGGATGCGGAAAGAGGAGGCTGTGAATTCATGGTCGAGCTCCTCCGGCGCCTCTGGCACCGCCGGAAGCGGCTGCTCTGCTGTCGCGCAGAAGCCGCGATCGCACATCCAGTTCTTTGTGCGAATGATGTCAGCCGGAAACACTATTGTGATGCAGGCTTTCCCCGAAGACAGCGTGAAATCGATTCATGAGCGTATCCAAAGCATGAAGGGAATTCCGGTGTTTGAACAGAGATTAATTTATCGGGGGAAGCAGCTTCAGTGGGAACAGACTCTCGCTGAATGTTCCATTCAAAACGACGCCAATCTTCAACTCGTTGGTCGCATGCGCAGTACTGAACACCCTCAGGCATGGCAAATTATCAACGACATGGTTTCCCTCGTGTATCGACTTTGCTGTGGTGAGACTGTTCACGATTCCTTGAAGACTATCAAGGGGTTAATCACCAGTTACTTGAACATGACTCCGAGGATTGACAACGAATCTGCTTCTGGGTATTTTCAGATTTTCATGTCTTCTTCTGCTCCTGACGTGCTTGTTATGCTCTATGTGTCCCCTTATGCAGGTAACAAGGATTGTGCTGAGTCTTCTGTTAGACACTTTTTGAGTTCTTGCCGAAATACCTTGTCTAAGGCATTGCATGGGCAGTGTGCATGTGTGGTCTTAGAGTTCTGTAAATTGCTTAGGAGAGTTGGAACTAATGACCCTTTGTATCTCTATTGCCGGAGTACCTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTACGCTGGTTCTGATAATGCTAAGGGGTTAGTTTTGATTAAGGACATTTTCCCCTTTGTTTTTGAGCTTGTTAATTGCTTGTTGATGGACTTGGACTCGAGTATGGAATCCCACAGAGCCGTGGGGCCTTTGTCTAATGATGTTGTGGATTTTACTGCCTTCTTAGTGCCTTTGAGAACTGGAATCAAGGAGCAACAAGCTGTCAATGGTTCTATGGCTCAAGACAAAAGTAATAAGGATCTCTTGCACGCCAAAGAGATTGAATATCTTCACTGTTTGTACATGCAGTTATTGAACAAAATCGACCAGTGCCTTCAAAAAATGGACCAGAACTTGGCTGGCCAGGAAATGATGGAAGGGGATAATCCTTATCCTGGGTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGAGGCGACATAGAAATGTGCTGTGTCTGTTGATTGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTTTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTCAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGGCTGAGTCTTTTGAATACATAGCGCGTGCTGAGCCTGAATCTCTACATGCTGGTTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCACTTTTTGTGGCATGCCCAACTGACAGAAGGAGATTTTTCCCTAATCCTGCATCTAGGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTAATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAGCTATATTATTGTTTTAGAGGATATCAGGAGCGCGGACCCTTGTCTGTATACTAGCTGCAAGAAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAGTTAGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGGGGAAAAAACGTTGTAGTTAATAGTAAGAACAGGGATAAGTATGTTGAACTTCTTATACAGGATCGCTTTGTAACATCCATATCCGAGCAGGTATCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCCAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCACGGGAGTGAAGACACCCTTTCTGTTGAGGATTGGAAAGCACACACCGAGTATAATGGTTACAGTGAGACAGATATTCAGATCTCTTGGTTTTGGGAGATTGTTGGGAGTATGACAGCTGATCAAAGGAAGGTTCTTCTATTCTTTTGGACATCTGTAAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCACGACTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCGTCTCACACATGCTTTTTCCGGCTGTGTTTCCCGGCTTATTCATCTATGGCTGTCATGAAAGAACGTCTCGAACTCATCACTCAAGAACACATTGGGTGCAGTTTTGATTATATGAGTGTTCCCATCAGTTCTCTAATTGGATACTGTGACATATTTCACCAGTTCTCTATTTTCCAAAGTAGTGGAGGGTTGCAGTGGCATTGGTCTTTATCAAATGTTTATATGGATAAAGATGGTAGTGCTCAGGATGGATCGGGTTACGGCCTAAAGGCCTGCTGCTTGCTCCCTCCCTCAGTAGAAACACCAAACTTTTTAAGTTATCTGTCTTAA 2823 0.4439 MSMIETPAVHHLSGGATDHHRHSSKRKLDEEDDGDFSDLVCVRMRKEEAVNSWSSSSGASGTAGSGCSAVAQKPRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMTPRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAGNKDCAESSVRHFLSSCRNTLSKALHGQCACVVLEFCKLLRRVGTNDPLYLYCRSTFGSLLETAGVSYAGSDNAKGLVLIKDIFPFVFELVNCLLMDLDSSMESHRAVGPLSNDVVDFTAFLVPLRTGIKEQQAVNGSMAQDKSNKDLLHAKEIEYLHCLYMQLLNKIDQCLQKMDQNLAGQEMMEGDNPYPGWSHYLSILKELYQISKLYDGAEEKLWSVLRRHRNVLCLLIVRYAKRTDEHQWILEHRFVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPTDRRRFFPNPASRVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGSYIIVLEDIRSADPCLYTSCKKILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNVVVNSKNRDKYVELLIQDRFVTSISEQVSHFAKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTLSVEDWKAHTEYNGYSETDIQISWFWEIVGSMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSMAVMKERLELITQEHIGCSFDYMSVPISSLIGYCDIFHQFSIFQSSGGLQWHWSLSNVYMDKDGSAQDGSGYGLKACCLLPPSVETPNFLSYLS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00092 940 SUPERFAMILY Ubiquitin-like 78 165 IPR029071 -
Vian1g00092 940 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 71 166 - -
Vian1g00092 940 Pfam Ubiquitin family 81 152 IPR000626 GO:0005515
Vian1g00092 940 SUPERFAMILY Hect, E3 ligase catalytic domain 503 855 IPR035983 GO:0004842
Vian1g00092 940 CDD HECTc 507 867 IPR000569 GO:0004842
Vian1g00092 940 Gene3D Hect, E3 ligase catalytic domain 753 867 - -
Vian1g00092 940 SMART ubq_7 78 150 IPR000626 GO:0005515
Vian1g00092 940 ProSiteProfiles Ubiquitin domain profile. 78 154 IPR000626 GO:0005515
Vian1g00092 940 MobiDBLite consensus disorder prediction 1 32 - -
Vian1g00092 940 Gene3D Hect, E3 ligase catalytic domain 628 711 - -
Vian1g00092 940 ProSiteProfiles HECT domain profile. 528 869 IPR000569 GO:0004842
Vian1g00092 940 SMART hect_3 526 867 IPR000569 GO:0004842
Vian1g00092 940 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 78 866 - -
Vian1g00092 940 Pfam HECT-domain (ubiquitin-transferase) 557 861 IPR000569 GO:0004842
Vian1g00092 940 Gene3D - 71 166 - -
Vian1g00092 940 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 629 711 - -
Vian1g00092 940 Gene3D Hect, E3 ligase catalytic domains 508 734 - -
Vian1g00092 940 FunFam E3 ubiquitin-protein ligase UPL5 753 868 - -
Vian1g00092 940 MobiDBLite consensus disorder prediction 14 32 - -
Vian1g00092 940 PRINTS Ubiquitin signature 131 152 IPR019956 -
Vian1g00092 940 PRINTS Ubiquitin signature 89 109 IPR019956 -
Vian1g00092 940 PRINTS Ubiquitin signature 110 130 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00092 Vian-Chr1 856953 866465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00092 78 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 3.76e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00092 - - gmx:100789233 1534.24