Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00083 ATGGGAGGCTCATGTTTCCATGCGCTTCGTTTGAGGAGGTTCAAGAGTAAGCCTCTGCCAGAACCCTCTTCTTCTTCGAGGGCACGGTTGGATTCTGACTTGGAGAACATGGAGAGAAGAAGGTTTGACAGCTTGGAATCATGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAAGCATCAAAGGAGGATCAAGAAGAATGGACTGCTGATCTTTCCCAACTTTTCATAGGTAACAAGTTTGCTTCCGGTGCTCACAGTAGGATTTACCGTGGAATTTACAAGCAGAGAGCTGTGGCTGTAAAAATGGTGAGGATTCCCACACAGGACGAGGAGAGAAGAGGCTTGCTCGAACAGCAATTCAAGTCAGAAGTTGCTTTACTTTCACGTCTCTTTCACCCTAACATAGTGCAGGTCATTAAGCTCTTAAAACTCTACAGCACTCAAACTTTTATTGCAGCTTGTAAAAAACCGCCAGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTAAACAAGAAAGAACCATACTCTCTTTCCACAGAAACCATACTACGGTTAGCTCTTGACATATCAAGGGGCATGGAGTACCTTCATTCGCAAGGTGTGATCCACAGAGACCTAAAGTCAAATAACTTGCTTCTCAACGATGAGATGAGGGTTAAGGTGGCAGACTTTGGAACATCGTGTCTCGAAACACGATGTCGGGAGACCAAGGGAAACATGGGAACATATCGTTGGATGGCCCCTGAGATGATTAAGGAAAAACCGTACACTCGTAAAGTTGATGTCTACAGCTTTGGAATTGTGCTCTGGGAGCTCACCACTGCTCTACTTCCATTCCAGGGAATGACCCCTGTTCAAGCTGCTTTTGCTGTTGCTGAGAAGAACGAAAGGCCTCCACTTCCTGCTAGTTGCCAACCAGCGCTTGCCCATCTGATAAAACGTTGTTGGTCAGCGAACCCTTCAAAGAGGCCAGATTTCAGTGACATTGTGTGCACTCTGGAGAAGTACGATGAGTGCGTGAAGGAGGGTCTTCCTCTGACTCATCATTCAGGCCTTGTCAGCAAAAACATCATCATCGAACGCTTAAAAGGTTGCGTCTCTATGAGCTCTTCCATACCTGTACAGGCTTGA 1161 0.4591 MGGSCFHALRLRRFKSKPLPEPSSSSRARLDSDLENMERRRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRGLLEQQFKSEVALLSRLFHPNIVQVIKLLKLYSTQTFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSGLVSKNIIIERLKGCVSMSSSIPVQA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00083 386 FunFam serine/threonine-protein kinase HT1 172 365 - -
Vian1g00083 386 Gene3D Phosphorylase Kinase; domain 1 64 171 - -
Vian1g00083 386 ProSiteProfiles Protein kinase domain profile. 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00083 386 SUPERFAMILY Protein kinase-like (PK-like) 55 343 IPR011009 -
Vian1g00083 386 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 70 345 - -
Vian1g00083 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vian1g00083 386 SMART serkin_6 77 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00083 386 FunFam Serine/threonine-protein kinase isoform 1 67 171 - -
Vian1g00083 386 CDD STKc_MAP3K-like 84 340 - -
Vian1g00083 386 Pfam Protein tyrosine and serine/threonine kinase 79 342 IPR001245 GO:0004672|GO:0006468
Vian1g00083 386 Gene3D Transferase(Phosphotransferase) domain 1 172 359 - -
Vian1g00083 386 PRINTS Tyrosine kinase catalytic domain signature 205 223 IPR001245 GO:0004672|GO:0006468
Vian1g00083 386 PRINTS Tyrosine kinase catalytic domain signature 270 292 IPR001245 GO:0004672|GO:0006468
Vian1g00083 386 PRINTS Tyrosine kinase catalytic domain signature 251 261 IPR001245 GO:0004672|GO:0006468
Vian1g00083 386 PRINTS Tyrosine kinase catalytic domain signature 167 180 IPR001245 GO:0004672|GO:0006468
Vian1g00083 386 PRINTS Tyrosine kinase catalytic domain signature 314 336 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00083 Vian-Chr1 768845 770849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00083 1 377 MAP Kinase Kinase Kinase AT1G62400 80.879 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian1g00083 PK_Tyr_Ser-Thr 1.7e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00083 - - gmx:100803225 726.857