Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00075 ATGAAAGCTTCAAAGCAGCAGCAGCAGCAGAAGCAGAATCAGCTCCAACAAAGAGGATGCAAGGCCTTGTGTTGCAGCTGCAGGTTCAGTGTTTCTTCTTCTGAAGAAGCAGAAAGCTCAGCCTCTGATAGGTTCCCTTCTGTTTCAAGCCTTGCACACGCCATGGTGCAAGAGAGACTTGACCAAATGATTAGAGAAAGGATGGAAGCTAGTCATGTAGAGAGAAGAAGACAGCAGAGCAGTGAAGGGACAAAGTTTGTCGTGATGGTAGCAATGGAGAAGAGCTCTTACGATCCAAGAGTAGATTTTAGAGAGTCCATGATGGAGATGATAGCTGCCAACCGCCTTCAAGACGCCAAAGATCTTCGTAGTCTATTGAACTATTATATCTCCATGAACTCTAATCAGTACCGTAGTCTTATTCTTGAGGTTTTTCATGAGGACGTGTCATGTAAAGATGTACATCAGTGGTTGGCTGCTTTGTCCATAGCAATCTGA 498 0.4458 MKASKQQQQQKQNQLQQRGCKALCCSCRFSVSSSEEAESSASDRFPSVSSLAHAMVQERLDQMIRERMEASHVERRRQQSSEGTKFVVMVAMEKSSYDPRVDFRESMMEMIAANRLQDAKDLRSLLNYYISMNSNQYRSLILEVFHEDVSCKDVHQWLAALSIAI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00075 165 NCBIfam uncharacterized plant-specific domain TIGR01568 90 147 IPR006458 -
Vian1g00075 165 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 11 147 IPR038933 GO:0045892
Vian1g00075 165 Pfam Transcriptional repressor, ovate 96 147 IPR006458 -
Vian1g00075 165 ProSiteProfiles OVATE domain profile. 92 151 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00075 Vian-Chr1 721429 722276 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vian1g00075 Ovate 1.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00075 - - var:108330150 267.7