Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00067 ATGGATGTTGTTGTCCCAAGAAGAGAACGCTCAAAAACTTCGCAAGCTGAGGATAAGCTGGCATTGTCCAGATGCTCGAAAGTTTACAGAAAATCGAAGAGAAAAGCTGAAGAAATGTCTGAGAATGGTGATAAGAAATCCGAACTGAAAGGGAAAGAAGGTGAGATGTGTTTAAAGAAGAATTGTGCAGTAAGGGTGACTAAAAAGAAGAGAAAGGTTCGAGAAAACTATATGTTTGATAATATAAAACCAAAGTTAGATGCCAAAGAAGATTCCTGTTTACCGAGGACAAGAAAACTACCATGCAATAGAAGAGATGAGAAACAAAAGCTTACTGTCTCAAACAAGAAAAGGAAATATAAAGATGATTTCTCGAGTGATGATTTAGAAGATGAAGAAATGCTTGTTATCTTAAGATCAAAGACCAGGAGCAGATTGAGAAGAATGAATAATGTGAAGGATGTTGAACAAAAGCCCCGAATCTGTCATCAATGCATGAAAAAGGAGAGAACACTTTTTGTGCCTTGTACTAAATGCCCGAAAATGTACTGTATGCAGTGTTTGGATAAATGGTACTCTGATATGACAATAGAAGAAATTGCTGCAAGTTGCCCGTTTTGCCAGAAAAACTGCAATTGCAATGTTTGCTTGCGCGCAAGAGGAATGATTAAGACATCTAACAGGGACATAACTGATTATGAAAAAGCTCAGTATCTGCATTATATGATCAACTTACTCCTACCATTTTTGAAACAAATTTGTCATGAACAAAGTCAAGAGGAGCAGATTGAAGCTAAAATACTAGGAAAACCTTCTTTTGAGAAGGAGATACCTCGAAGTCTTTGTGGCAACGATGAACGTGTCTATTGTGATCATTGTGCTACTTCAATTATTGATCTTCATAGAAGCTGCCCCAGATGTTCCTATGAACTCTGCCTCAGTTGTTGCCAAGAAATACGTGATGGAAGAATTACACCCCGGGTGGAGCAGAAGTTCTCATATGTGAATAGGGGCTATGATTATATGCATGGTGGAGACCCTCTACCTGTGTCTAATGATTTCAGGACATCAGAATGTCAAACCAAGCTATCTAATGTGTGGAATGCCAAGAGTGATGGAATCATCCGATGTGCACCAAAGGAGTTGGGGGGTTGTGGCAGTGCTGCATTGGAGCTGAGACGTGTCCTACCAAGTGGCTGGATATCTGAATTGGAAATCAAAGCTCGCAGGACGCTGAAAATTTGGGAAGATGAAAACACAACTCGTAAGCTAGAAAAAGCAGCATCAAGCTACACCTCTTTGAGAAAGGAAGCTATGAAAGAAGACATAAATGGCAATAATATGTACTGTTCAGAGTCAAGTAGCATTCAAAAGGGAGAGTTGTTGCTTTTCCAAAAGCATTGGGCTAATGGCGAACCAATTATAGTTCGTGATGCCGTTAAACTGGGGACCGGTCTGAGTTGGAAGCCGATGGTAATGTGGCGAGCATTGTGTGAAAATAGGGCTTCAGAGGTCAGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATCGATACTCGCACATTTTTCAAAGGTTATATCGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCCCGCCACTGTGATGAGTTTATTCGCTCATTGCCATTCCAAGAGTACAGTGATCCTCGGGGCGGAATTCTCAATCTTGCTGCGAAGTTGCCAGCCCATGTCATAAAACCTGACATGGGTCCGAAAACTTATATTGCCTATGGGATCAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTCAATATTTTAACGCATACAGCAGAGGTGATGTTAACTGATGAGCAGCACTTAATTATTTCAAAGTTGAAAGAAGCACACAAGGTACAAGATGAGAGAGAGCAGTGTGCTGAAGAAAGGGTTACCAACAGCCTGAACTGCCGAACTTTCAAAGACAACAAAGTACGGATAGAAAACAAGGTAGTTTTAGAATCCAATGACATAGAGAAGCGTCCTATTGAAATTAATGGAAGGATATTTACAAAGGATGTACATGAAGAGGTCGCTTCTGCTATAGAGAATGAATCAACGGAAACAGGCAGTGCTCTATGGGATATCTTTCGAAGAGAAGATTCTAAGAAGTTAGAATCATATCTCAGGAAACACTCAAAAGAATTTAGACATACTTATTGTTCTCCAGTTGAACAGGTTGAACATCCAATTCATGACCAATGTTTCTATTTGACATGGGAGCACAAGAAGAAGCTGAAGGAGGAGTTCGGTGTAGAACCGTGGACTTTTGAGCAAAAACTTGGGGAGGCTGTCTTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCGGTAGACTTTGTGTCTCCGGAAAACATCCATGAGTGTCTGCGTTTAACTAATGAGTTTCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGTCACAGACCTAAAAGCTTTACTAAAGTTTTCATGA 2655 0.4064 MDVVVPRRERSKTSQAEDKLALSRCSKVYRKSKRKAEEMSENGDKKSELKGKEGEMCLKKNCAVRVTKKKRKVRENYMFDNIKPKLDAKEDSCLPRTRKLPCNRRDEKQKLTVSNKKRKYKDDFSSDDLEDEEMLVILRSKTRSRLRRMNNVKDVEQKPRICHQCMKKERTLFVPCTKCPKMYCMQCLDKWYSDMTIEEIAASCPFCQKNCNCNVCLRARGMIKTSNRDITDYEKAQYLHYMINLLLPFLKQICHEQSQEEQIEAKILGKPSFEKEIPRSLCGNDERVYCDHCATSIIDLHRSCPRCSYELCLSCCQEIRDGRITPRVEQKFSYVNRGYDYMHGGDPLPVSNDFRTSECQTKLSNVWNAKSDGIIRCAPKELGGCGSAALELRRVLPSGWISELEIKARRTLKIWEDENTTRKLEKAASSYTSLRKEAMKEDINGNNMYCSESSSIQKGELLLFQKHWANGEPIIVRDAVKLGTGLSWKPMVMWRALCENRASEVSSKMSEVKAIDCLANCEVEIDTRTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRGGILNLAAKLPAHVIKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHLIISKLKEAHKVQDEREQCAEERVTNSLNCRTFKDNKVRIENKVVLESNDIEKRPIEINGRIFTKDVHEEVASAIENESTETGSALWDIFRREDSKKLESYLRKHSKEFRHTYCSPVEQVEHPIHDQCFYLTWEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDEAVTDLKALLKFS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00067 884 Pfam JmjC domain, hydroxylase 727 830 IPR003347 -
Vian1g00067 884 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 30 880 IPR045109 GO:0032454|GO:0033169
Vian1g00067 884 MobiDBLite consensus disorder prediction 31 51 - -
Vian1g00067 884 CDD cupin_RmlC-like 771 831 - -
Vian1g00067 884 Gene3D Cupin 443 856 - -
Vian1g00067 884 ProSiteProfiles JmjC domain profile. 582 847 IPR003347 -
Vian1g00067 884 ProSiteProfiles Zinc finger RING-type profile. 162 208 IPR001841 -
Vian1g00067 884 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 158 227 IPR018866 -
Vian1g00067 884 SMART cupin_9 563 847 IPR003347 -
Vian1g00067 884 SUPERFAMILY Clavaminate synthase-like 463 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00067 Vian-Chr1 622302 626223 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian1g00067 JmjC 5e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00067 K15601 K21989 gmx:100797860 1343.56