Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00065 ATGAAGCACTTCGTCGTGGCCATGCTAATAATGGCTTTGGCCATTTCTGTGTCAGGAAAAGAAGCAAAAAATGTGAAAAACAGATTCCTTTCTGAGAGGGTGGTGGTGACGTGCGACAAATACCCAAATGTGTGTGACATTAAAGGTAGCGCAGGATCAGATTGCTGCATGAAAAAATGTGTGAACTTGTCCACAGATGGCTCCAACTGCGGAAAGTGTGGAAAGAAATGCAGTTATGGAAAGATATGCTGCCAAGGGAACAACTACTACAACAACACTCCCCAACCTCTCTCAAAGTACATTCCTAAGAAACCATTGCTCAATGTGATAGACTCTTGCTGGAGGGCCAGACCAAATTGGAGCTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGAGGCCACAGGAGGCAACAACAAAACCATTGATGGAAGAGGAGCAAAAGTGGAGATTGCTGATGGGCCTTGCATTACAATATCGAATGTTAGCCATGTTATCATACATGGCATTAGCATCCATGATTGCGAACCAGCCAAGCCTGGCCTGAACACTCCTGACCATGTTGGCCATCGTTTAGGCTCCGATGGAGATGCCATCAGCATAATCGATTCCACCAATGTTTGGATTGATCATTGTTTTTTGGCTCGTTCCACCGATGGCCTAATCGATGTTATTCGTGCCTCAACCGCCATTACCATCTCTAACAATTACTTTACTCAGCACGACAAAGTTATGTTGCTAGGACACAGTGACCAATTCACAAAGGATAAAATAATGAAAGTGACAATAGCCTTCAACCAGTTTGCCAGTGGCCTAACTGAGAGGATGCCAAGTGAAGGGAATTTTTATGTAGCACCGAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGTGAAGGAGAACTGGAAAAGTTGGAAATGGAGGTCTTCCAAGGACTTGTTTTTCAATGATGCTTATTTTGTACCCTCTGGAGTTGGAAGCTGTGCTCCAAATTACTCACCAACTCAATATTTTGCTGCTGCTCCAGCATACATGGTGCCTGCAATAACTCTCAATGCAGGCCCCACATATTGTACTGTTGGAAGAGCATGTTAG 1110 0.4441 MKHFVVAMLIMALAISVSGKEAKNVKNRFLSERVVVTCDKYPNVCDIKGSAGSDCCMKKCVNLSTDGSNCGKCGKKCSYGKICCQGNNYYNNTPQPLSKYIPKKPLLNVIDSCWRARPNWSSNRQALADCAIGFGKEATGGNNKTIDGRGAKVEIADGPCITISNVSHVIIHGISIHDCEPAKPGLNTPDHVGHRLGSDGDAISIIDSTNVWIDHCFLARSTDGLIDVIRASTAITISNNYFTQHDKVMLLGHSDQFTKDKIMKVTIAFNQFASGLTERMPSEGNFYVAPNDPNAKQVTKREVKENWKSWKWRSSKDLFFNDAYFVPSGVGSCAPNYSPTQYFAAAPAYMVPAITLNAGPTYCTVGRAC 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00065 369 Pfam Stigma-specific protein, Stig1 25 88 IPR006969 -
Vian1g00065 369 Pfam Pectate lyase 141 282 IPR002022 -
Vian1g00065 369 Gene3D - 107 362 IPR012334 -
Vian1g00065 369 SUPERFAMILY Pectin lyase-like 108 360 IPR011050 -
Vian1g00065 369 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Vian1g00065 369 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vian1g00065 369 PANTHER PECTATE LYASE 18-RELATED 282 367 IPR045032 GO:0030570
Vian1g00065 369 SMART amb_all 129 293 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00065 Vian-Chr1 592606 595411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00065 82 369 Polysaccharide Lyase AT4G22080 46.933 2.08e-113 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00065 K01728 - gmx:100807483 434.491