Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00039 ATGGGTTGTCACGGCAGCAAGGAGAAAAAATCAAACGCAGAATTCAGCTCTGCTTATGGATCAGGCACTCGCAGTGGCAGTGGTAGTCAAAATACTGTTCAACCACCACCTACCACCACTGTTGCTCAGGCTCAAACATCGCCTCCTCCCAAACCACAAAGACCGTCGGAGGTGGTAGCGAGTGCACCAAAACCCAATCTTTCTCCGACCCAGAATGCGAGGGCGGTGCAGAAACCCGACACCACGATTCTGGGCAAACCCTTTGAGGATATAAAGAAGTACTACACTCTGGGGAAGGAACTGGGAAGAGGGCAATTCGGGGTAACGTATCTGTGCAAGGAGAATGCCACCGGAATCACGTACGCGTGCAAGTCGATTCTGAAGAGGAAGCTGGTGTCGAAGGCGGACAGGGAGGATATGAAGAGGGAGATTCATATCATGCAGCATTTGTCTGGGCAGAACAACATTGTGGAGTTCAAGGGGGCGTACGAGGACAGGATGTCGGTCCACCTTGTAATGGAACTCTGCGCCGGCGGGGAGCTATTCGACCGGATCATCGCCCAGGGTCATTACTCTGAGAGAGCCGCCGCCTCACTCTGCCGCGCCATTGTCAACGTTGTTCACATTTGCCACTTCATGGGAGTCTTGCACCGCGATCTCAAGCCCGAAAATTTCCTGCTCTCTTCTAAGGATGACGATGCTACGCTCAAGGCTACTGATTTTGGACTCTCTGTCTTCATTGAAGAAGGTTACCATCACTTTCACTTTCACCCCCTCCCTGTTTTAGATATTCAGGAGGCAGTATCTGATCAGGACATCCATTGGAAGGTATATCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCCGAGGTATTGCGTCGTAGTTATGGAAAAGAAATAGATATTTGGAGTGCAGGCGTCATATTGTATATTCTTCTCAGTGGTGTACCACCTTTTTGGGCTGAAACTGAGAAGGGAATATTTAACGCCATATTGGAAGGTGAACTTGATTTTGCAAGTGAACCATGGCCATCCATATCAGACAGCGCCAAAGATCTAGTCAGGAAGATGCTGACACAAGATCCAAAGAAGCGGATTACTTCTGCACAAGTCCTTGAACACCCGTGGATGAGAGAAGGTGGAGAGGCATCTGATAAACCAATCGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTTGCATTAAAGGTTATTGCCGAAAATCTATCAGAAGAGGAGATTAAAGGTCTGAAAGCAATGTTTGCAAATATGGACACTGACAATAGTGGCACAATTACCTATGAAGAATTGAAGACTGGCTTGGCTCGAATTGGATCAACATTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCTGCTGATGTTGATGGAAATGGCTCAATCGACTATCTTGAATTCATTTCGGCTACAATGCATAGGCACAGACTTGAACGAGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGGTACATTACTAGAGATGAATTGGAGACTGCTATGACCCAACATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTACGAGGAATTTTGTGCAATGATGAGAAGTGGAATGCCACAGCAGGGAGGGTCAGCTAATCCACTGATTGGTTGA 1722 0.4634 MGCHGSKEKKSNAEFSSAYGSGTRSGSGSQNTVQPPPTTTVAQAQTSPPPKPQRPSEVVASAPKPNLSPTQNARAVQKPDTTILGKPFEDIKKYYTLGKELGRGQFGVTYLCKENATGITYACKSILKRKLVSKADREDMKREIHIMQHLSGQNNIVEFKGAYEDRMSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRAIVNVVHICHFMGVLHRDLKPENFLLSSKDDDATLKATDFGLSVFIEEGYHHFHFHPLPVLDIQEAVSDQDIHWKVYHDMVGSAYYVAPEVLRRSYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFNAILEGELDFASEPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSTLSEAEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPQQGGSANPLIG 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00039 573 SUPERFAMILY Protein kinase-like (PK-like) 93 386 IPR011009 -
Vian1g00039 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vian1g00039 573 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Vian1g00039 573 Gene3D Phosphorylase Kinase; domain 1 97 180 - -
Vian1g00039 573 CDD STKc_CAMK 95 377 - -
Vian1g00039 573 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Vian1g00039 573 FunFam Calcium-dependent protein kinase SK5 181 390 - -
Vian1g00039 573 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00039 573 ProSitePatterns Protein kinases ATP-binding region signature. 101 128 IPR017441 GO:0005524
Vian1g00039 573 MobiDBLite consensus disorder prediction 1 81 - -
Vian1g00039 573 ProSiteProfiles EF-hand calcium-binding domain profile. 493 528 IPR002048 GO:0005509
Vian1g00039 573 Gene3D - 386 560 - -
Vian1g00039 573 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Vian1g00039 573 PANTHER SERINE/THREONINE-PROTEIN KINASE 89 553 - -
Vian1g00039 573 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Vian1g00039 573 CDD EFh 500 558 IPR002048 GO:0005509
Vian1g00039 573 SMART efh_1 461 489 IPR002048 GO:0005509
Vian1g00039 573 SMART efh_1 532 560 IPR002048 GO:0005509
Vian1g00039 573 SMART efh_1 425 453 IPR002048 GO:0005509
Vian1g00039 573 SMART efh_1 497 525 IPR002048 GO:0005509
Vian1g00039 573 FunFam Calcium-dependent protein kinase 1 386 561 - -
Vian1g00039 573 ProSiteProfiles EF-hand calcium-binding domain profile. 529 563 IPR002048 GO:0005509
Vian1g00039 573 SMART serkin_6 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00039 573 SUPERFAMILY EF-hand 417 557 IPR011992 -
Vian1g00039 573 Gene3D Transferase(Phosphotransferase) domain 1 181 385 - -
Vian1g00039 573 MobiDBLite consensus disorder prediction 63 78 - -
Vian1g00039 573 MobiDBLite consensus disorder prediction 12 47 - -
Vian1g00039 573 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Vian1g00039 573 FunFam Calcium-dependent protein kinase 1 97 180 - -
Vian1g00039 573 ProSitePatterns EF-hand calcium-binding domain. 541 553 IPR018247 -
Vian1g00039 573 Pfam EF-hand domain pair 426 486 IPR002048 GO:0005509
Vian1g00039 573 Pfam EF-hand domain pair 496 558 IPR002048 GO:0005509
Vian1g00039 573 Pfam Protein kinase domain 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00039 Vian-Chr1 381448 385699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00039 1 571 EF-hand Containing Proteins AT4G04720 71.030 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian1g00039 Pkinase 2.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00039 K13412 - gmx:100816859 906.746