Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00020 ATGACTTATAAACTAGTTTGTTTTGTTTTAGTCTCCTGGACTCAATCCAAGTCAGGTTTTGTAAGACCTAGACAGAGCAATCTTAAATGCTTTATAACTTTAATTTTATTATGTGTTATGACAGTAACAGAGTTCATCATCGGGTTGATGGAAGAGATTGGATATGTAATGCCCACAGATATCCAGAGGGAAGCTTTGCCTTACCTTTTTTCCGGGCGTGACTGCATTCTTCATGCTCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTTTGATTCACTCCCTCATTAATGCTGCAAAATCCTCTGTGCAAGCCCTAGTTGTTGTGCCCACCCGGGAACTCGGAATGCAAGTCACCAAGGTCGCCAGGACATTGGCTGCAAAGCCAACTGGAGTTGATGGGGAGCACAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACACTAAAAAGACAGAAGACTTGGTTAAAGGCAGAGCCACCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATACTTTTTCGCTTGAAACTGTGCGTGTGCTGATTATATATTTTGTTGACTGTATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTTATATTCATCTTCCAACAACCGTCAGACGGTCTTTGCCAGTGCATCTATACCACAGCATAACCGATTTATTCATGACTCTGTGCAGCAAAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAAGATGTGAAACCAAAAGAAAATTACAAACCCTGTTATCCTTGTTACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCCAAAAAGGCTGGAAAGGCTCCATCAACGTCCCTTCTGATTGACTTTTTGAAGACATCATACCAAGGTGATTTGGATGTCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGCTTGAGGTTAGAAAAGGAGGTGGATATCTTCTTGTAGCAACAGATATAGCTGCTAGGGGGGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCAGTTGATTATCTTCATCGAGCAGGCCGAACATGTAGGAAGCCTTTTTCTGACATCAATTGTACTGTTACCAGCATTATTGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTGACTGTGAAGAACTTATTATTCCATAA 1308 0.4136 MTYKLVCFVLVSWTQSKSGFVRPRQSNLKCFITLILLCVMTVTEFIIGLMEEIGYVMPTDIQREALPYLFSGRDCILHAQTGSGKTLTYLLLIHSLINAAKSSVQALVVVPTRELGMQVTKVARTLAAKPTGVDGEHKSCSIMALLDGGTLKRQKTWLKAEPPTIVVATVGSLCQMLERHTFSLETVRVLIIYFVDCIFNSSKQVSSLRKILTLYSSSNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIRCETKRKLQTLLSLLQSDAPESGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDVLLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAVDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFDCEELIIP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00020 435 Gene3D - 262 432 IPR027417 -
Vian1g00020 435 SMART ultradead3 54 269 IPR014001 -
Vian1g00020 435 SMART helicmild6 314 398 IPR001650 -
Vian1g00020 435 Pfam DEAD/DEAH box helicase 59 232 IPR011545 GO:0003676|GO:0005524
Vian1g00020 435 Gene3D - 39 252 IPR027417 -
Vian1g00020 435 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 248 IPR014001 -
Vian1g00020 435 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 42 425 - -
Vian1g00020 435 Pfam Helicase conserved C-terminal domain 277 396 IPR001650 -
Vian1g00020 435 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 435 IPR001650 -
Vian1g00020 435 CDD DEADc 46 232 - -
Vian1g00020 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 400 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00020 Vian-Chr1 237456 244531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00020 40 420 Eukaryotic Initiation Factors Gene Family AT3G13920 26.302 1.05e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00020 - - gmx:100786205 727.628