Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01689 ATGGCTACAACTACGACTAGATCTTTTCTCCAAGTCGCGGTGACGGAGGAGGCTGCGCCGTCTCTTAGAGTCGTCCAGATTGAAGGACTGGTTATTCTTAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGGCAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGTTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTGGAAATGATGAGATGCCTGAGGGAAGTTAATGTTGACAACAATACTGTTGGATGGTACCAATCTACGTTGCTCGGCTCCTTTCAGACTGTGGAACTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGTTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTGGCTCTGAAGGCCTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGGGAGAAATTGAGGGAGAAGAATTTATCATGGGTGGATATATTTGAGGAAATACCGATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTCATGACTGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGATTATGACCGTCTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATACGGAGTTTTTGATAGAATGCATGGATGACTTGTCACTAGAACAACAAAAGTTCCAATTCTACTATAGGAGTTTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTCCAAAAGAGAAGGGCGGAGAACATGGCTCGTAAAGCTGCTGGCGAAGAGCCCTTGCCGGAAGAAGATCCTTCAAATCCCGTTTTCAAGCCCCTCCCCGAGCCATCACGGTTGGAGAACTTCCTCATAACAAATCAAATTTCCAACTACTGTAATCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGGCTGTATTTGATGAAGGCTTTGCATGAAGATTGA 1014 0.4379 MATTTTRSFLQVAVTEEAAPSLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPSNPVFKPLPEPSRLENFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01689 337 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vian11g01689 337 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Vian11g01689 337 Pfam C-terminal region of eIF3h 144 336 IPR045810 -
Vian11g01689 337 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743|GO:0005737|GO:0005852
Vian11g01689 337 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian11g01689 337 SMART pad1_6 24 157 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian11g01689 337 MobiDBLite consensus disorder prediction 269 295 - -
Vian11g01689 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 17 321 - -
Vian11g01689 337 FunFam Eukaryotic translation initiation factor 3 subunit H 4 213 - -
Vian11g01689 337 Gene3D Cytidine Deaminase, domain 2 2 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01689 Vian-Chr11 27640878 27644584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01689 88 337 Eukaryotic Initiation Factors Gene Family AT1G10840 83.600 2.66e-157 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01689 K03247 - gmx:100795273 642.884