Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01635 ATGGAAATCGTGGAAAAGAGAAAATTTTCTAAACTGTTGTCAGAGCTGATAGTTTTGGCCGATGAGGTTGCTTCTCTTGCTAAGAACTCTGAAATTGAGGTACATATTTTTTCTGAGTTTGCCATGTTGGTTGAGAAATTCTCACCAATCTTCAATGACTTGAGAGACAAAAACACAGTTTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAATGAGCTGAGGCGTGCCAAAGCTTTGACAAAAAGCTCGAATTTGAGGCAACCCATCAAGCAAATTGAGGACATAACACATGACATAGGTCGATCCTTTGGCCTTCTGCTCGTAGCCAGCCTAGAAATTTCCGTGGATTTCAGAGAAAAGATTGGTACATTGCAAAGACAGTTGATGAATGTGAGATTTGATGGCAGTTTAAGTGTAGCTTCAAGTCCAAAATCAGAGGTTTCCGGCAGTGAAGTGAAGCTGACTGCAGAAATAGAAGAGGAGATAGTTAATGTTTCTATTGCTGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTTCACTTTTGAGACTGAAGGAGTTCATAGATAGTGAAAGATTTGATGGTGGTTTGATCAACGAGGAAGCAACTCTTTCCATTCTTTTCAACCGTCTAGGCTCGTGTAAGGCAGACAACAGGTTGGCAATCATGCGGTTGCTAAGAAGTATTGCTTCAGGAAATTATGAGAAAAAGGAGAAGATGGTAGATATTGATTTCTTATCAGCAGTGGTGAAGTCACTCACAAGAGATTCAGAGGAGAGGAAGGAAGCAGTAGGGCTGTTGCTAGAGCTCTCCGACATTCAGGCCGTTCGCCGGCGAATCGGAAGAATTCAAGGCTGCATTGTTATGTTAGTTGCTATCCTTAATGGGGATGACCCTGATGCCTCAAATGATGCTGCAAAGTTATTGGATATATTGTCTAGTAATTCTCAAAATGCACTTCATATGGCCGAGGCTGGCTACTTTAGGCCACTAGTGCAGTATTTGAAAGAAGGATCTGACATGAACAAGATTCTAATGGCGACAGCACTTTCAAGGTTGGAACTCCCTGATCACAGTAAGCTTTCCCTTGGAGAAGATGGGGCAATTGAGCCCCTTGTCAACATGTTCAGCACAGGGAAACTGGAGTCCAAGTTATCAGCTCTAAATGCGCTGCAAAATCTGTCAACCGTGGCAGAAAATGTGCAGCGTTTGATCAGATCAGGAATTTCAGGATCTCTGCTACAACTTCTTTTCTCAGTTACATCTGTGCTCATGACATTGCGTGAGCCTGCATCAGCCATTCTTGCAAGAATTGCTCAGTCTGAATCCATCCTTGTGAATGAAGATGTGGCTCAGCAGATGCTTTCACTTTTGAATCTTTCCAGCCCCATTATCCAGGGCCATTTGTTAGAAGCTCTAAATAACATAGCCTCCCACCCTGGTGCATCCAGAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAGCTTCTCTTACCCTTTCTGAAGGAAAACACCACCAAAGTCAGGAGCAAGGTCTTGCATCTTTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTCATCTCTTAAACATAGTCAATATAGTCTCAACATCAACATCAGACAGTGAAAGAGCTGCAGCTGTTGGCATACTGAGTAATCTTCCTGCTAGTAACAAAAAGGTGACTGATATACTGCAGAGGGCAAATTTGCTGCCAATTTTAATATCCATCATGTATACTATCTCAGGAAGTAACTCATCAACAACAAATAACTTAGCAGAGAGTATTGCCAGTGTTATCATTCGCTTCACCAATTCCTCTGACAAAAAACTACAAATTCTCTCAGCCGAACAAGGGGTGATTCCTTTGCTTGTGAAACTGCTCTCAAGCGGTTCACCAATCACAAAAGCAAGGGCTGCAGTCTCACTGGCTCAACTATCTCAGAATTCTCTGTCTCTTAGAAAGTCTAGAAAGTCAAGGTGGTTGTGTGTTCCTCCCTCGGTGAATGCATTCTGTGAAGTTCATGATGGATTTTGCTTTGTAAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTCATCCAACTGTTAGAAGATACTGAGAGAGAAGCAGTTGAAGCTGCTTTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAGTTGCATTGCCAAGTTATCTGGTGTGCAAGCCATCATAAAAAGTCTTGAAGTTGGCGATGCAAAGGTTCAAGAAAAAGCAATATGGATGCTGGAGAGAATATTCAAAGTTGCAGAACATAGAGTTAAGTATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCTCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTAGCTGAGCTTGAGCTCTTGCAATCTCAGTCAAGTTACTTTTAA 2493 0.4172 MEIVEKRKFSKLLSELIVLADEVASLAKNSEIEVHIFSEFAMLVEKFSPIFNDLRDKNTVLDKPPIRKSLESLENELRRAKALTKSSNLRQPIKQIEDITHDIGRSFGLLLVASLEISVDFREKIGTLQRQLMNVRFDGSLSVASSPKSEVSGSEVKLTAEIEEEIVNVSIADVVLQLKNGNDEEFAVSLLRLKEFIDSERFDGGLINEEATLSILFNRLGSCKADNRLAIMRLLRSIASGNYEKKEKMVDIDFLSAVVKSLTRDSEERKEAVGLLLELSDIQAVRRRIGRIQGCIVMLVAILNGDDPDASNDAAKLLDILSSNSQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELPDHSKLSLGEDGAIEPLVNMFSTGKLESKLSALNALQNLSTVAENVQRLIRSGISGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASRVRSKMKEKGALQLLLPFLKENTTKVRSKVLHLLYTLSKDLTDELTEHLDETHLLNIVNIVSTSTSDSERAAAVGILSNLPASNKKVTDILQRANLLPILISIMYTISGSNSSTTNNLAESIASVIIRFTNSSDKKLQILSAEQGVIPLLVKLLSSGSPITKARAAVSLAQLSQNSLSLRKSRKSRWLCVPPSVNAFCEVHDGFCFVNSTFCLVKAGAVSPLIQLLEDTEREAVEAALHALSTLLQDEIWEGGVSCIAKLSGVQAIIKSLEVGDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01635 830 SUPERFAMILY ARM repeat 167 488 IPR016024 -
Vian11g01635 830 Gene3D - 696 828 IPR011989 -
Vian11g01635 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Vian11g01635 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 164 830 - -
Vian11g01635 830 Gene3D - 193 332 IPR011989 -
Vian11g01635 830 Coils Coil 70 90 - -
Vian11g01635 830 SUPERFAMILY ARM repeat 372 784 IPR016024 -
Vian11g01635 830 SMART arm_5 698 738 IPR000225 GO:0005515
Vian11g01635 830 SMART arm_5 365 405 IPR000225 GO:0005515
Vian11g01635 830 SMART arm_5 742 782 IPR000225 GO:0005515
Vian11g01635 830 SMART arm_5 324 364 IPR000225 GO:0005515
Vian11g01635 830 SMART arm_5 491 531 IPR000225 GO:0005515
Vian11g01635 830 SMART arm_5 626 666 IPR000225 GO:0005515
Vian11g01635 830 SMART arm_5 242 281 IPR000225 GO:0005515
Vian11g01635 830 Gene3D - 333 678 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01635 Vian-Chr11 27011884 27015046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01635 215 830 U-box Gene Family AT1G76390 29.287 4.52e-48 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01635 K08332 - gmx:100791453 1350.88