Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01612 ATGGCTTCTAGTCATCCATTCTTTGATGATATCCGAAGCAGATCAAGCGTCGATCCTCCTCAAACGGAAGAGCCAACTGAAGTTGGTGAACTTGTGAATGAGCCTCTGCAGACTGCCCTTAAACCTCACGGGACTGTTACAAGCAGTGTTCGCGAGCTGTTAGAGTGCCCTGTGTGTTTAAATGCTATGTACCCTCCAATCCACCAGGCTGATCTATGTGAGATGATTGGATATCTTCAACTGTTTTTGGTAAGATATGAAGAAATTTGGATTATACATGCTATGGAAATGGATGATAAATTAGGGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGATCGGTGCCCTACATGTAGGCACGAGCTTGGCAATATCAGATGTCTGGCACTAGAAAAGGTGGCTGCATCATTAGAACTTCCATGTAAATATCAAGGTTTTGGATGCATGGGCATATACCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCATTTAGACCTTATAATTGCCCATATGCTGGTTCAGAATGTTCAGTTATGGGTGATATACCTTACCTTGTGACCCATCTGAAAGATGATCATAAAGTGGACATGCACAATGGTTGTACTTTCAATCACCGTTATGTCAAAACAAATCCACAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGTTGCTTTGGTCAGTATTTCTGTCTACACTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATCGCCTTTTTGCGGTTCATGGGGGACGACAATGAGGCGAAGAACTACACGTACAGTCTGGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGCATTAGGGATAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAGCATGGCTCTTTTCTTTTCTGGGGGTGACAAGAAGGAACTGAAACTACGAGTCACTGGGAGAATTTGGAAAGAGCAGTGA 1014 0.4398 MASSHPFFDDIRSRSSVDPPQTEEPTEVGELVNEPLQTALKPHGTVTSSVRELLECPVCLNAMYPPIHQADLCEMIGYLQLFLVRYEEIWIIHAMEMDDKLGCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAFRPYNCPYAGSECSVMGDIPYLVTHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRSMALFFSGGDKKELKLRVTGRIWKEQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01612 337 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 196 330 IPR008974 GO:0005515
Vian11g01612 337 FunFam E3 ubiquitin-protein ligase SINAT5-like 198 330 - -
Vian11g01612 337 CDD RING-HC_SIAHs 54 125 - -
Vian11g01612 337 FunFam E3 ubiquitin-protein ligase SINAT3 139 197 - -
Vian11g01612 337 CDD Sina 203 331 - -
Vian11g01612 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 195 IPR013083 -
Vian11g01612 337 ProSiteProfiles Zinc finger SIAH-type profile. 142 202 IPR013010 GO:0008270
Vian11g01612 337 SUPERFAMILY TRAF domain-like 142 334 - -
Vian11g01612 337 MobiDBLite consensus disorder prediction 1 28 - -
Vian11g01612 337 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 34 336 - -
Vian11g01612 337 Pfam Seven in absentia protein family 131 330 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01612 Vian-Chr11 26690901 26693614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01612 30 337 C3H Transcription Factor Family AT2G41980 67.419 1.47e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01612 K04506 - gmx:100793457 589.726