Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian11g01612 | ATGGCTTCTAGTCATCCATTCTTTGATGATATCCGAAGCAGATCAAGCGTCGATCCTCCTCAAACGGAAGAGCCAACTGAAGTTGGTGAACTTGTGAATGAGCCTCTGCAGACTGCCCTTAAACCTCACGGGACTGTTACAAGCAGTGTTCGCGAGCTGTTAGAGTGCCCTGTGTGTTTAAATGCTATGTACCCTCCAATCCACCAGGCTGATCTATGTGAGATGATTGGATATCTTCAACTGTTTTTGGTAAGATATGAAGAAATTTGGATTATACATGCTATGGAAATGGATGATAAATTAGGGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGATCGGTGCCCTACATGTAGGCACGAGCTTGGCAATATCAGATGTCTGGCACTAGAAAAGGTGGCTGCATCATTAGAACTTCCATGTAAATATCAAGGTTTTGGATGCATGGGCATATACCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCATTTAGACCTTATAATTGCCCATATGCTGGTTCAGAATGTTCAGTTATGGGTGATATACCTTACCTTGTGACCCATCTGAAAGATGATCATAAAGTGGACATGCACAATGGTTGTACTTTCAATCACCGTTATGTCAAAACAAATCCACAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGTTGCTTTGGTCAGTATTTCTGTCTACACTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATCGCCTTTTTGCGGTTCATGGGGGACGACAATGAGGCGAAGAACTACACGTACAGTCTGGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGCATTAGGGATAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAGCATGGCTCTTTTCTTTTCTGGGGGTGACAAGAAGGAACTGAAACTACGAGTCACTGGGAGAATTTGGAAAGAGCAGTGA | 1014 | 0.4398 | MASSHPFFDDIRSRSSVDPPQTEEPTEVGELVNEPLQTALKPHGTVTSSVRELLECPVCLNAMYPPIHQADLCEMIGYLQLFLVRYEEIWIIHAMEMDDKLGCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAFRPYNCPYAGSECSVMGDIPYLVTHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRSMALFFSGGDKKELKLRVTGRIWKEQ | 337 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian11g01612 | 337 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 196 | 330 | IPR008974 | GO:0005515 | |
Vian11g01612 | 337 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 198 | 330 | - | - | |
Vian11g01612 | 337 | CDD | RING-HC_SIAHs | 54 | 125 | - | - | |
Vian11g01612 | 337 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 139 | 197 | - | - | |
Vian11g01612 | 337 | CDD | Sina | 203 | 331 | - | - | |
Vian11g01612 | 337 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 195 | IPR013083 | - | |
Vian11g01612 | 337 | ProSiteProfiles | Zinc finger SIAH-type profile. | 142 | 202 | IPR013010 | GO:0008270 | |
Vian11g01612 | 337 | SUPERFAMILY | TRAF domain-like | 142 | 334 | - | - | |
Vian11g01612 | 337 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Vian11g01612 | 337 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 34 | 336 | - | - | |
Vian11g01612 | 337 | Pfam | Seven in absentia protein family | 131 | 330 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian11g01612 | Vian-Chr11 | 26690901 | 26693614 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian11g01612 | 30 | 337 | C3H Transcription Factor Family | AT2G41980 | 67.419 | 1.47e-153 | 431 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian11g01612 | K04506 | - | gmx:100793457 | 589.726 |