Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01603 ATGCCAAAATGCATTAATAATTGCCACAACTTGGAAGGCTTCTGGAAAAATTGGCACGCTTCCTTCAACAAGTGGCTTGTGAGGTATATTTACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTATATTCACATTTGTTGCAATCTGGCATGATTTAGAGTGGAAGCTTCTTTCATGGGCATGGTTGACGTGTATATTCTTCATCCCTGAGCTCAAAGTTCTTTTGGAGTATGCATATTTCGTGAACTCAGTGCTGTTGCTGGGGCAATCACAATTACTTGCCTCATGCATTAACGTTGAGCTCAAGCTCCATGCTATGGTCACTCGCAAGTGCGCGAAAGTTGACGCACGCGTGGTGTGCGTCGAGTCGCCTAGGGTTGTGTTGCTGGTTGACGTGTATCTTCCTATTCAAGTGTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCAGTTGCCGCCGCCATTTTTCGCCATTTGAGCTGTGATTGGGATGAGCGAAGTTCAATGCTTTCATATCCAGACTATTGTAGGAAGACTCATGGAGCAAATGAGAGTAATTGGAACCTTTCTGATTGTCATGTACTTTGTTGCAAGCTCCATCCCCATGTTAGCAGTTCTTCAAGGAAAAGCCTATTTGAACTTCATGAACTTTTCAAGACACTACCTGGCGTAGGAAAACAACGGATGTTTAATAGCTCCAAAATAATTCCTATGGATCACTCATGCAGATGGGGCATTTGGGAGTTATCTGATGATATTTTAACAAAAATTTTATCTTCCCTGGACCCAATGGACCTCACTAGGGTTTCTGAAACGTGTCATCATCTAAGATCATTGGCTGCTTCTGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCTGACAGCTGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTCGCCACACCCTTTATATGCATTTCTCTCAACTGAAGATGGTTTTAATTTCCATGTAAATACCGTTTCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAGGGATTTTCGAGGAGGAATGTTTTGTGATGAACCTGGTTTGGGTAAGACTGTAACTGCACTCTCTCTTATTATGAAGACACGAGGTACATTGGCAGATCCACCAGATGAGGCACAAGTTGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGTTATTATGAGATCAGTGGTAATAACATAACTGGTTGTTCTGCATTGGGTAAAAGGAACGTGAGCCAATATATCAGTAGAACTAATGATAACCATGAATACTCCTCCAAAAAAGCCAGAATGTCAAATCCTGACCAACACATGATTAAACTTCAGAGTTCATGTTCCATGGAAGTAAACAAATCACCTGTGGAGGCACGGTTTAAGGAATCTATGCATTCAAATCAGTATACTAGGAGTTTGAGCCGTATAAAGAAAAATCTATGCTTCACAAACGAAGAGGAAGCTATAATATCCAAGGAAAGAGAAACTGAAGGATTAATTAAAGCAAATCATGCCTCAGATGTTACACCTCATTTATCTCAAAAGAAGCTGCCTGGGAAGCCTGAAGGTGATCCTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTGGCAGACAATAGTATGGCTAGTTCTAGTGCAGCATGGTTTTGTAGTATGAACCCTGACCCTCTTTATCAAAGTTGTAGTGTCCCTGAACAACATTTTCGTTCTACATCTAGGATAACATACTTGCCAGGGTTTCACTTAAAAGGAACTCATGGTGGTGACAGACAAAATGTTTCTTTTTTCACCAGCGTGCTTAAGGAGCACTACTCACTGATAAATTCTCAGACGAAAAAAGCCCTGGCCTGGTTGGCTAAAATTTCAACAGACAAGCTAGCAGCTATGGAAACAAATGGAATAAGAGGTCCTATTTTAAACACGTGTACTGCATCTGGCAGACATTTTAATGCCTTCCACAAAGTATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGACAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCACTCCGTGAGCCTATAGATTTTGTTAGGTTATACTTGTCAAGGGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGGATTTATGTTTGGACTGATCACAGGAAGCCATCTGTGCATTGTCTTGCATGGGATTACGACATTGTCATAACCACTTTTAGTCGTCTGAGTGCTGAGTGGGGCCCTCGTAAGAGGAGTGTTTTGATGCAAGTACATTGGTTTCGGGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCCTAAACTTAACAAACAAGTTGCAAATGGCCATTTCATTGATAGCTTCTAATCGATGGATACTAACAGGAACTCCTACACCTAACACTCCTAACAGCCAACTTCCACATCTGCAAACATTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTCAGGCCATTTGAAGCAGAAATGGAGGAAGGAAGGTCTCGTCTGTTAGATCTGCTTCACAAATGCATGATTAGTGCTAGAAAGACAGATTTACAAAGCATCCCACCATGCATCAAGAAAGTTGTTTATCTGGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACTGTAAGGCGTAATATATTGATGGCTGATTGGAATGATCCCTCACATGTTGAGAGTCTACTGAATCCAAAGCAGTGGAAGTTTCGTAGGGCAACTATAAAAAATGTCAGGCTTTCGTGCTGTGTTGCTGGACATATTAAGGTTACACATGCTGGTGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTGGATCCTACTTCTGGAGAGTATACCTCCATAAGATGTAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGGTCATTACACCATGTCGGCATTTGTTGTGCCTTGATTGTGTTTCTATTGACCATACGAAGTGTACTTGTCCTGGCTGCAGTAAATTGTATGAGATGCAAAGTAGACTTCCCCGACCTGAAAATCCTAATCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCGTCGTATAAGCAGGCATGCATATACATGTCATCGAACAGCAGTTGTATGGCGCTTCTAATGGATGGAACCATGGCGATGCATAAAGAGCAAGTAATTAGTCGTGCTCATCGAATGGGTGCTTCTCGTCCTATTCATGTTGAAACACTAGCAATGCATGGTACAATTGAAGAGCAAATGCTAGGCTTTTTACAGGTGAATCTCTATAAATTCAAGCAGATAAGCCAGTTTCTGTTGGCCATGTCTGTTGAAGAGCAAAAATGCTTAGAGGGCATGATAAAAAATGTGGCAGAGACAGGGCCATTGCCTCTAGGGAAAAAGTTATCTATTGAAACTAAGATCTGTGAAACAAAAGGTAACATGAGTTATATGATGAATTTTTCGGTAGCTATAAGCTTTTATTTAATTAGAATTAACAATGTATTTAACGTGGAAACCATTCTTTTTAGGATTGAGTCCAATTATATAATTTCTAGTTTAATTCTTGATGGTTTTATTAGGAATGTTCACCTATCTAATCTCGCTGTGGATGACACTCTTGAAGAACAAACCTCTTACATATTTGGAAGTCTCGTAGAGTTAGATATGATAGTTCAGATGGCAATAGTTTCTATATTCCACCTTGGTCGAGCGACCCATCCTAACCTACTAGATATATCAGATGGTCAGTTAGAATGTTGGTTGAGGGATATAATGCGATGTTTATATTGCATGTAG 3960 0.4119 MPKCINNCHNLEGFWKNWHASFNKWLVRYIYIPLGGSKKKLLNVWVIFTFVAIWHDLEWKLLSWAWLTCIFFIPELKVLLEYAYFVNSVLLLGQSQLLASCINVELKLHAMVTRKCAKVDARVVCVESPRVVLLVDVYLPIQVWSGWQFPRSGAVAAAIFRHLSCDWDERSSMLSYPDYCRKTHGANESNWNLSDCHVLCCKLHPHVSSSSRKSLFELHELFKTLPGVGKQRMFNSSKIIPMDHSCRWGIWELSDDILTKILSSLDPMDLTRVSETCHHLRSLAASVMPCTKLNLFPHQLTAVEWMLHRERNAELSPHPLYAFLSTEDGFNFHVNTVSGEIVTGEAPTIRDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPDEAQVVWCQHNGNQKCGYYEISGNNITGCSALGKRNVSQYISRTNDNHEYSSKKARMSNPDQHMIKLQSSCSMEVNKSPVEARFKESMHSNQYTRSLSRIKKNLCFTNEEEAIISKERETEGLIKANHASDVTPHLSQKKLPGKPEGDPFEYSDTWIQCDACHKWRKLADNSMASSSAAWFCSMNPDPLYQSCSVPEQHFRSTSRITYLPGFHLKGTHGGDRQNVSFFTSVLKEHYSLINSQTKKALAWLAKISTDKLAAMETNGIRGPILNTCTASGRHFNAFHKVFQAFGLLKRVDKGVCKWFYPQHLNNLTFDVAALGMALREPIDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDHRKPSVHCLAWDYDIVITTFSRLSAEWGPRKRSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQTLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLDLLHKCMISARKTDLQSIPPCIKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRCNLLYGGHCVRCKEWCRLPVITPCRHLLCLDCVSIDHTKCTCPGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQACIYMSSNSSCMALLMDGTMAMHKEQVISRAHRMGASRPIHVETLAMHGTIEEQMLGFLQVNLYKFKQISQFLLAMSVEEQKCLEGMIKNVAETGPLPLGKKLSIETKICETKGNMSYMMNFSVAISFYLIRINNVFNVETILFRIESNYIISSLILDGFIRNVHLSNLAVDDTLEEQTSYIFGSLVELDMIVQMAIVSIFHLGRATHPNLLDISDGQLECWLRDIMRCLYCM 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01603 1319 SMART fbox_2 253 293 IPR001810 GO:0005515
Vian11g01603 1319 ProSiteProfiles Zinc finger CW-type profile. 534 585 IPR011124 GO:0008270
Vian11g01603 1319 CDD F-box_SF 252 284 - -
Vian11g01603 1319 Pfam CW-type Zinc Finger 539 582 IPR011124 GO:0008270
Vian11g01603 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 720 892 IPR027417 -
Vian11g01603 1319 Gene3D - 1101 1181 IPR027417 -
Vian11g01603 1319 Gene3D - 701 897 IPR038718 -
Vian11g01603 1319 Pfam MBOAT, membrane-bound O-acyltransferase family 1 76 IPR004299 -
Vian11g01603 1319 SMART ultradead3 291 863 IPR014001 -
Vian11g01603 1319 SUPERFAMILY F-box domain 244 286 IPR036047 GO:0005515
Vian11g01603 1319 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 697 852 IPR014001 -
Vian11g01603 1319 ProSiteProfiles Zinc finger RING-type profile. 1015 1052 IPR001841 -
Vian11g01603 1319 Gene3D - 534 587 - -
Vian11g01603 1319 Pfam F-box domain 252 287 IPR001810 GO:0005515
Vian11g01603 1319 SUPERFAMILY RING/U-box 1007 1057 - -
Vian11g01603 1319 ProSitePatterns Zinc finger RING-type signature. 1030 1039 IPR017907 -
Vian11g01603 1319 Pfam SNF2-related domain 298 938 IPR000330 GO:0005524|GO:0140658
Vian11g01603 1319 CDD RING-HC 1014 1051 - -
Vian11g01603 1319 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1110 1144 - -
Vian11g01603 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 376 IPR027417 -
Vian11g01603 1319 CDD DEXDc_SHPRH-like 716 893 - -
Vian11g01603 1319 ProSiteProfiles F-box domain profile. 247 299 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01603 Vian-Chr11 26554472 26577300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01603 722 1079 RAD5 or RAD16-like Gene Family AT5G22750 28.715 1.89e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian11g01603 SNF2_N 8.1e-99 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01603 - - gmx:100803102 1809.27