Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01597 ATGGGTATGGCTGCAGAGGCACAGTTTCATGTTTTGGCTGTTGATGATAGCCTTATCGACAGAATGTTGATTGAGAGACTCCTCAAAACCTCTTCTTTTCATGTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAGGTTTCTTGGTTTGGTTGAAGATGAGAAGAGAACTGAAGAGCCTCCCACCATTGCTTTACAAGCCAATCAGGATGTAGAAGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACAGGATATGATCTGCTGAGAAAAATCAAGGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTTCCATCAAGGATCAACAGATGCCTAGAAGATGGAGCTGATGAATTCTTTTTGAAACCAGTTCAACAGTCAGATGTGAACAGGCTGAGACCTCATCTGATGAAATCAAAAGTTAAGGATGAAGAAGAGGAACAGATCAATAACAAAAGGAAGGAAACAGAAGAAGAAGAAGAGCATTCCCCAGATAAAACCAGGACAAAAATGGAGCCTCAAAAAGTGGTTAATTGA 564 0.3989 MGMAAEAQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSGSKALRFLGLVEDEKRTEEPPTIALQANQDVEVNLIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEDGADEFFLKPVQQSDVNRLRPHLMKSKVKDEEEEQINNKRKETEEEEEHSPDKTRTKMEPQKVVN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01597 187 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 171 IPR045279 GO:0009736
Vian11g01597 187 SUPERFAMILY CheY-like 9 145 IPR011006 -
Vian11g01597 187 Coils Coil 148 171 - -
Vian11g01597 187 CDD REC_typeA_ARR 11 141 - -
Vian11g01597 187 Pfam Response regulator receiver domain 11 138 IPR001789 GO:0000160
Vian11g01597 187 MobiDBLite consensus disorder prediction 140 187 - -
Vian11g01597 187 ProSiteProfiles Response regulatory domain profile. 10 146 IPR001789 GO:0000160
Vian11g01597 187 SMART REC_2 9 145 IPR001789 GO:0000160
Vian11g01597 187 Gene3D - 10 185 - -
Vian11g01597 187 MobiDBLite consensus disorder prediction 142 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01597 Vian-Chr11 26517846 26518887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01597 1 163 Response Regulator Gene Family AT3G57040 65.060 3.82e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian11g01597 Response_reg 5.2e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01597 K14492 - gmx:100818762 288.115