Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01592 ATGAGCATGTTAGGCCTTAGAGACCTAGTGCTCATAGCTCAAACACCTTCCCTGCACCAAGGCCAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTTCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCTCACCAAACCAATGAGATTCAAGACTGTGGTGCTGCTGCTGGTGGCAACACCACCACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCGAAGAAGGGTGTGATCAACATGGATGATGATGATGAGGAGGATGACGAGAGACATCATCACCATAAGGGTATGATGGAGAGCGAAGAAAATGGAATTTATGGACCTGACTTCCGAGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGCGGATACGATTGCAGCACTCATGTGAAGAGCACGTGGGTCCCTTCAATTCGCCGCCGGGAGCGGGAAATGGTGGTGGCTCCCGCCGGAGGCGTTGGTGGTGGCAGTAAGAGGCCAAGAGCTATAGTGGGGTCCTCACAAAATGCCACTGCCACTTCTCACAGCTCCAACTCCAATGCTACAACACCTAAAAGCTTAGCCACAATCTCTTCTCACCAAGATGCTAGCTTCAAACAGTCTTTACCTGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCCTACTTGGCAACGGTGCACATCAGTGGCCATGTCTTCAAAGGGTTTCTCTATGACCATGGAGTTGATGGGAAAATTGCAAATGCAGTGCCTTGTGTTTCGGAACTGCAGCTGGGAAACAATTGCAGTGGCAAGACCAGAGAATGTTCTTCTGCAATTGGACTTCCAAATAACAATGCATACCCTGCTTCTGCCACCTGA 987 0.4995 MSMLGLRDLVLIAQTPSLHQGQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQTNEIQDCGAAAGGNTTTTTNYWNLKMCPEVNPPKKGVINMDDDDEEDDERHHHHKGMMESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRREREMVVAPAGGVGGGSKRPRAIVGSSQNATATSHSSNSNATTPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKIANAVPCVSELQLGNNCSGKTRECSSAIGLPNNNAYPASAT 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01592 328 MobiDBLite consensus disorder prediction 184 220 - -
Vian11g01592 328 Pfam Domain of unknown function (DUF702) 133 285 - -
Vian11g01592 328 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 80 315 IPR007818 GO:0003700|GO:0006355
Vian11g01592 328 MobiDBLite consensus disorder prediction 197 220 - -
Vian11g01592 328 NCBIfam LRP1 C-terminal domain 237 284 IPR006511 -
Vian11g01592 328 NCBIfam putative zinc finger domain, LRP1 type 133 175 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01592 Vian-Chr11 26436296 26437542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01592 134 301 C2H2 Transcription Factor Family AT5G12330 56.111 7.60e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vian11g01592 DUF702 2e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01592 - - vun:114175485 589.726