Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01573 ATGGATGAATACCACTGTAATGCATACCCACTGCTTTCTTTCTCTGCGTCAGAATGTCTACCTTTTCCCAATGATCACCAACACTTCAATGTAGATTTTCAGTACTCAAACATGCACGATTTGAATGGAAGCAAATCAGAAGCCTTTGACAACGTTTTGCTCCACAAATTTCAAAACATTTCGAAGAATGAAATGTTGAAAGAAACAACCATCGTGTACTGTCTTTCCCGCATGGGTTTGCCTCAAAATGCTCACGGTGTCGTGGTCGCAGAAGTGTTACGGTGTGCACGTGACATGATTCGTGACACAGCTCTCCGACATAGACTTGTTCTTTGTATGCGTGTGGAAATCGGCATTACTCGTGCAAACCAAGATGGAATAAGTGTCAGTGCAAACCAAGATGAAATAAGTGCCAGTGTTATCGACAACGTTAGCGATGATGATCATTTTGAGGAAGCTGAGGAATATGGATTCGAAGAAGACGATGAAGATTATGGATTAGTGCCTGCAGACAAGGCATTTGTTGAAGGTTTGGAGATGGTTCAACAAAAGGGTTCGGAAAGGTGTGCCATTTGTTTCGAGGATTTTCTTTTTGGTGTTCGTATGCCTTGCTTGCATGCGTTTCACAAAAGCTGCATCACTGAGTGGTTGCAAATAGGAAATTCTTGCCCTTTGTGTCGCATTCATTTGCCTGCTCAAAGTGATTGA 708 0.4237 MDEYHCNAYPLLSFSASECLPFPNDHQHFNVDFQYSNMHDLNGSKSEAFDNVLLHKFQNISKNEMLKETTIVYCLSRMGLPQNAHGVVVAEVLRCARDMIRDTALRHRLVLCMRVEIGITRANQDGISVSANQDEISASVIDNVSDDDHFEEAEEYGFEEDDEDYGLVPADKAFVEGLEMVQQKGSERCAICFEDFLFGVRMPCLHAFHKSCITEWLQIGNSCPLCRIHLPAQSD 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01573 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 235 IPR013083 -
Vian11g01573 235 Pfam Ring finger domain 188 227 IPR001841 -
Vian11g01573 235 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
Vian11g01573 235 SMART ring_2 189 226 IPR001841 -
Vian11g01573 235 SUPERFAMILY RING/U-box 188 232 - -
Vian11g01573 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 137 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01573 Vian-Chr11 26160501 26161208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01573 189 234 C3H Transcription Factor Family AT2G44330 55.102 4.19e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01573 - - vum:124848049 442.195