Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01558 ATGCTGTCTTCAAATGTTGTTCCATCATCTTCCCCTCTCACTTTCACCAAACCCAATCCCCATTTCTTCATCAATGCATCTTCCCATCTCAAACCAAATCTTCTCACAAGGTTTCAGACCCAACACAGAGCCACTCCTCTCCAAAGTTCCAAACTTTCTTTCACCCCAACATCTCAGATCCAACATGCAATCTCAAAGGTAAGATCTTTCAACGGATACCTTCTTCACCCTCTTCAGCCCTCGTCAAAACCCAGGCTTCAAATCGTTAAGGCTGCGTCTGAAACCAATCCTGGAGGAGAAAATGTTGACCCCAGTGTCCCCAAATCCAAGAATCTCAAACTTGCTCTGGTGTTTGGGCTATGGTACTTCCAGAACATCGTGTTCAACATTTACAACAAGAAAGTGCTAAACATATTCCCTTTCCCATGGCTTCTTGCTTCTTTCCAGCTCTTGGTTGGGTCTATTTGGATGCTGGTGCTTTGGTCCTCTAAGCTCCAACCTTGTCCGAAAATCTCGAAACCATTCATCGTTGCTCTCCTTGGACCTGCTTTGTTCCACACAATAGGCCACATTTCAGCTTGTGTGTCATTCTCCAAGGTGGCTGTGTCCTTCACCCATGTCATCAAATCTGCAGAACCGGTTTTCTCTGTCATATTTTCCTCTGTCCTTGGTGATAGATACCCCATTCAGGTTTGGCTCTCCATTCTACCCATTGTGCTTGGTTGTTCTTTGGCTGCTGTTACTGAGGTGTCTTTCAATGTACAAGGATTGTGGGGTGCCCTCATTAGCAATGTTGGTTTTGTGTTGAGGAACATCTACTCTAAGAGAAGTTTGCAGAATTTCAAGGAAGTTGATGGTTTAAACTTGTATGGCTGGATTACCATTCTTTCATTCCTGTACCTGTTTCCAGTGGCTATTTTTGTTGAAGGGTCTCAGTGGATCCCTGGGTATTACAAGGCTATTGAAGCTATAGGAAAACCATCCACATTTTATATCTGGGTGCTGTTGTCTGGGGTTTTCTACCATCTTTACAATCAATCATCATACCAAGCACTTGATGAAATTAGCCCTTTGACTTTCTCTGTGGGAAACACAATGAAAAGAGTGGTGGTGATTGTATCTACGGTTTTGGTGTTCAGGAATCCTGTTCGACCTCTTAATGCCCTTGGATCTGCCATTGCAATTCTTGGGACTTTCCTGTATTCACAGGCAACATCCAAAAAGAAAGAAAAGAAAATTGAAGGGGAAAAGAGTAGTTAG 1260 0.4333 MLSSNVVPSSSPLTFTKPNPHFFINASSHLKPNLLTRFQTQHRATPLQSSKLSFTPTSQIQHAISKVRSFNGYLLHPLQPSSKPRLQIVKAASETNPGGENVDPSVPKSKNLKLALVFGLWYFQNIVFNIYNKKVLNIFPFPWLLASFQLLVGSIWMLVLWSSKLQPCPKISKPFIVALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVIFSSVLGDRYPIQVWLSILPIVLGCSLAAVTEVSFNVQGLWGALISNVGFVLRNIYSKRSLQNFKEVDGLNLYGWITILSFLYLFPVAIFVEGSQWIPGYYKAIEAIGKPSTFYIWVLLSGVFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVSTVLVFRNPVRPLNALGSAIAILGTFLYSQATSKKKEKKIEGEKSS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01558 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 293 405 - -
Vian11g01558 419 Pfam Triose-phosphate Transporter family 112 402 IPR004853 -
Vian11g01558 419 PANTHER SOLUTE CARRIER FAMILY 35 113 408 - -
Vian11g01558 419 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 112 412 IPR004696 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01558 Vian-Chr11 25954206 25955465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01558 24 417 Antiporters AT5G17630 69.048 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01558 K15283 - gmx:100101869 716.072