Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian11g01555 | ATGTGCCGTGGTCCAGAGAAATCAGAATCTCTATCAACTCCATCTTCATCTGCTGTAGAAGGTTCAACTAGAGCCGAAGACATGAAAGATCTAACTGTTTGTCCTGAAGATTCTTTTTCCTGCCTACTCGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGCTAGCTTTAGATAGCGATATTTCTCTAATAAACGAAGTTGGCCTCTGGTATGTCCGTCAGATTGGATCCAAACAAATTGTTTTGGAGCACCGAACTCCTTTAATGGTTGCTGCAATGTATGGGAGTGTGGATGTTCTAAAACTTATACTGTCGTGTCCCGAGGTTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTTCATTGTGCTGCATCAAGTGGTTCTTTAAATGCAGTTGATGTTGTGAAATTGCTCTTGTCATCTGGTGCTGACGTCAGATGCGTGGATGGTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCAAAGGTCTTAAAGCATCTCTTGAAGATCTACTTTCAGATAGTGGTTGTGATGGGTCTGTTGGTGACTGTTTTATTCCACTAGCAGTTAATTCGTCATGTTCTGATTCAGCGACTCATTTTTTATCACCTGAAAATGGGTTGCCATCCTCTCCTATGGCGTCCAAGTTTACTGATACTACTGTTAATTCTGCCTCCGAGAAGAAAGAATATCCAACTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCCACAGATGAGTTTCGCATGTTTTCATTCAAGGTGCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAATTCCATTATAGTTGTGTGCCATGCCCTGAGTTTAGAAAGGGGGCTTGTAGACGCGGGGACATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTACACCCTGCCCAATATCGGACAAGGCTGTGCAAAGATGGTGTTAGTTGTAATAGAAGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCCGCTGTTCCTTCACCCCGTTCTTCTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCTGGTTCACCATCGTCACTTTCTGGCATGTCTCCATCTCCCTTCGCTCAGCAAATGTCTCCATCAGGTGGCATTCTTCACTCATCTTCTGCTTGGCCGCAGCCAAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCACCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACATCTGTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCCGGTGCCATTTCAGTTAAACGATCTGGTCGGTCTAAGACACTAACTCCATCAAACCTTGATGATCTATTTTCTGCTGAAATTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCCTTATCACCCATAAATACGAGTGTTTCGTCTCCTAGGAATGTTGAGCATACTCTTTTACAGGCTTCATTTGGTGTCTCTTCCCCGGGAAGGATGTCACCGAGAAGTTTGGAACCAATCTCTCCAATGAGCGCCCGATTATCTGCACTTGCGCAGCGTGACAAGCAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCGATTGTTGGGTCCCCAGGTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAGGTAGATTGGTCGATAAATGGAAATGAGCTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAAACAACGGGGAGGAGCCTGATCTGTCCTGGGTTCAATCCCTCGTGAAGGAATCGCCATCCGAGATTAAAGAGAAGTTGGCAGGTTCTGGTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGATATGGGACAGTTGCAGGTTGACGTGAAGATCGCATTGATTATTGTGTTGATGGGGACCAAGGATCAGGAGGACATGGGAAGTGGACCCACCCACATTAGATATTCTGATACTCCTTAG | 2277 | 0.4537 | MCRGPEKSESLSTPSSSAVEGSTRAEDMKDLTVCPEDSFSCLLELASNNDFEDFKLALDSDISLINEVGLWYVRQIGSKQIVLEHRTPLMVAAMYGSVDVLKLILSCPEVDVNFSCGTDRSTALHCAASSGSLNAVDVVKLLLSSGADVRCVDGNGNRPVDVIVVPPKLKGLKASLEDLLSDSGCDGSVGDCFIPLAVNSSCSDSATHFLSPENGLPSSPMASKFTDTTVNSASEKKEYPTDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSLSGMSPSPFAQQMSPSGGILHSSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPEDLDVLQDFDGQQHLLNDLSCFSQPRPGAISVKRSGRSKTLTPSNLDDLFSAEISSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNVEHTLLQASFGVSSPGRMSPRSLEPISPMSARLSALAQRDKQQLRSLSSRDLGAHNPVSIVGSPGNSWSNWGSPHGNGKVDWSINGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLAGSGGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLDMGQLQVDVKIALIIVLMGTKDQEDMGSGPTHIRYSDTP | 758 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian11g01555 | 758 | Gene3D | - | 298 | 360 | - | - | |
Vian11g01555 | 758 | MobiDBLite | consensus disorder prediction | 399 | 418 | - | - | |
Vian11g01555 | 758 | SUPERFAMILY | Ankyrin repeat | 30 | 163 | IPR036770 | - | |
Vian11g01555 | 758 | MobiDBLite | consensus disorder prediction | 592 | 606 | - | - | |
Vian11g01555 | 758 | MobiDBLite | consensus disorder prediction | 220 | 243 | - | - | |
Vian11g01555 | 758 | MobiDBLite | consensus disorder prediction | 220 | 238 | - | - | |
Vian11g01555 | 758 | SMART | c3hfinal6 | 332 | 355 | IPR000571 | GO:0046872 | |
Vian11g01555 | 758 | SMART | c3hfinal6 | 297 | 323 | IPR000571 | GO:0046872 | |
Vian11g01555 | 758 | Pfam | Ankyrin repeats (3 copies) | 69 | 151 | IPR002110 | GO:0005515 | |
Vian11g01555 | 758 | Gene3D | - | 26 | 176 | IPR036770 | - | |
Vian11g01555 | 758 | FunFam | Zinc finger CCCH domain-containing protein 66 | 255 | 323 | - | - | |
Vian11g01555 | 758 | SMART | ANK_2a | 84 | 114 | IPR002110 | GO:0005515 | |
Vian11g01555 | 758 | SMART | ANK_2a | 119 | 151 | IPR002110 | GO:0005515 | |
Vian11g01555 | 758 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Vian11g01555 | 758 | MobiDBLite | consensus disorder prediction | 679 | 698 | - | - | |
Vian11g01555 | 758 | ProSiteProfiles | Ankyrin repeat profile. | 119 | 154 | IPR002110 | GO:0005515 | |
Vian11g01555 | 758 | MobiDBLite | consensus disorder prediction | 592 | 622 | - | - | |
Vian11g01555 | 758 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
Vian11g01555 | 758 | Pfam | CCCH-type zinc finger | 302 | 322 | IPR041367 | - | |
Vian11g01555 | 758 | PANTHER | UNKEMPT FAMILY MEMBER | 44 | 672 | IPR045234 | - | |
Vian11g01555 | 758 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 324 | IPR000571 | GO:0046872 | |
Vian11g01555 | 758 | ProSiteProfiles | Ankyrin repeat region circular profile. | 119 | 153 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian11g01555 | Vian-Chr11 | 25905407 | 25909804 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian11g01555 | 6 | 718 | C2H2 Transcription Factor Family | AT5G12850 | 53.741 | 0.0 | 698 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vian11g01555 | Ank_2 | 2.1e-10 | CL0465 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian11g01555 | - | - | gmx:100792574 | 1236.48 |