Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01540 ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCGTTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCCTATTCATACTCAAACATAACTAACACCACCAACACCTTCTCCAATATTGTTCAATCAGAAACCTCCTCTTCATCTTGTGCAGCTCCTCCTTCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAGTCTCATAAAGCACAAGGAGAATGAACCCTCCAACGCTGGCTGCGAAGCTGAAGAGGAAGGGCACAAGAAAGGAGACATGGATGAGACCCTTTTGACTGAAGATGGTGATGATGAAACTGTGGCAGTAGCACTGCACATAGGTCTTCCTAGCGTGGATTCTTCTGATCTTCTGGGATCGGGGAAGATCTCAGCTTGTGCACAAATGGGTGAGAAAGGGGAAGTGAGTGTGGTTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTCATTGGCCCTACTCAGTTTTTATGTTCTGTGTGCTCCAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGTTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGTATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAGGGTGATTGGCGGACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGTCATGGAGCTGTTGATATTGATTGCATGCAGGAAGATGAAGCTGCATCCGAAGTTGAACATGATGGAGATAGCTCAATGTGA 1026 0.4386 MTDPHSNLYAGTFNFMPLYSHRSSFTSQPNHFSSYSYSNITNTTNTFSNIVQSETSSSSCAAPPSPPLREALPLISLIKHKENEPSNAGCEAEEEGHKKGDMDETLLTEDGDDETVAVALHIGLPSVDSSDLLGSGKISACAQMGEKGEVSVVSGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEVEHDGDSSM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01540 341 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Vian11g01540 341 Gene3D Classic Zinc Finger 234 319 - -
Vian11g01540 341 Gene3D Classic Zinc Finger 180 203 - -
Vian11g01540 341 SUPERFAMILY beta-beta-alpha zinc fingers 249 285 IPR036236 -
Vian11g01540 341 SMART c2h2final6 291 314 IPR013087 -
Vian11g01540 341 SMART c2h2final6 181 203 IPR013087 -
Vian11g01540 341 SMART c2h2final6 265 285 IPR013087 -
Vian11g01540 341 FunFam Zinc finger protein WIP2 234 316 - -
Vian11g01540 341 PANTHER ZINC FINGER PROTEIN WIP2 31 334 IPR043584 GO:0003700|GO:0010468
Vian11g01540 341 SUPERFAMILY beta-beta-alpha zinc fingers 174 203 IPR036236 -
Vian11g01540 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 208 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01540 Vian-Chr11 25698557 25700511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01540 19 334 C2H2 Transcription Factor Family AT1G51220 55.060 1.74e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g01540 zf-C2H2_6 2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01540 - - vra:106761045 666.381