Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian11g01540 | ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCGTTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCCTATTCATACTCAAACATAACTAACACCACCAACACCTTCTCCAATATTGTTCAATCAGAAACCTCCTCTTCATCTTGTGCAGCTCCTCCTTCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAGTCTCATAAAGCACAAGGAGAATGAACCCTCCAACGCTGGCTGCGAAGCTGAAGAGGAAGGGCACAAGAAAGGAGACATGGATGAGACCCTTTTGACTGAAGATGGTGATGATGAAACTGTGGCAGTAGCACTGCACATAGGTCTTCCTAGCGTGGATTCTTCTGATCTTCTGGGATCGGGGAAGATCTCAGCTTGTGCACAAATGGGTGAGAAAGGGGAAGTGAGTGTGGTTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTCATTGGCCCTACTCAGTTTTTATGTTCTGTGTGCTCCAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAGCAATGCTAAGGCTTCCATGTTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGTATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAGGGTGATTGGCGGACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGTCATGGAGCTGTTGATATTGATTGCATGCAGGAAGATGAAGCTGCATCCGAAGTTGAACATGATGGAGATAGCTCAATGTGA | 1026 | 0.4386 | MTDPHSNLYAGTFNFMPLYSHRSSFTSQPNHFSSYSYSNITNTTNTFSNIVQSETSSSSCAAPPSPPLREALPLISLIKHKENEPSNAGCEAEEEGHKKGDMDETLLTEDGDDETVAVALHIGLPSVDSSDLLGSGKISACAQMGEKGEVSVVSGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEVEHDGDSSM | 341 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian11g01540 | 341 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 183 | 203 | IPR013087 | - | |
Vian11g01540 | 341 | Gene3D | Classic Zinc Finger | 234 | 319 | - | - | |
Vian11g01540 | 341 | Gene3D | Classic Zinc Finger | 180 | 203 | - | - | |
Vian11g01540 | 341 | SUPERFAMILY | beta-beta-alpha zinc fingers | 249 | 285 | IPR036236 | - | |
Vian11g01540 | 341 | SMART | c2h2final6 | 291 | 314 | IPR013087 | - | |
Vian11g01540 | 341 | SMART | c2h2final6 | 181 | 203 | IPR013087 | - | |
Vian11g01540 | 341 | SMART | c2h2final6 | 265 | 285 | IPR013087 | - | |
Vian11g01540 | 341 | FunFam | Zinc finger protein WIP2 | 234 | 316 | - | - | |
Vian11g01540 | 341 | PANTHER | ZINC FINGER PROTEIN WIP2 | 31 | 334 | IPR043584 | GO:0003700|GO:0010468 | |
Vian11g01540 | 341 | SUPERFAMILY | beta-beta-alpha zinc fingers | 174 | 203 | IPR036236 | - | |
Vian11g01540 | 341 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 181 | 208 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian11g01540 | Vian-Chr11 | 25698557 | 25700511 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian11g01540 | 19 | 334 | C2H2 Transcription Factor Family | AT1G51220 | 55.060 | 1.74e-117 | 341 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vian11g01540 | zf-C2H2_6 | 2e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian11g01540 | - | - | vra:106761045 | 666.381 |