Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01535 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCAATGTGATTTTATTCATGAGAGAAAGGATGGTGTAAGTAGTAATATTTGTACCTATTATCAAAAAGGAGTATGTGCTTATGGCAGTAGATGCAGATATAAACATGTCAAAGCTTATGAAGCGACGTCTTCTTCATCAAACGGACGTCATCCTCCTGTTTCAGATTCTGTGCTGAATCAAACCACCAAAGGGGCATCAAGTTGTGTTCCAAAGGCTTCGAAGCCATCTTCATCAGACAAGTGTGCAAGGAGTTCACAACATAAGAATCTGGTCTCTTCTGGAAATGATGTTGGTCAATCCAGTTCTAGTGGTGCTACAGCATCTGGACTTTTGTTTTGTTCATTTGCTGCTGCCAACTGCCCCCTTGGAAATAAATGTTCTCGTGTTCATGGAAATCGATGTTTTTACTGTAGAAAATTTTGCTTACATCCTACTGACAGTGAGGAAAGAGAAAATCATTTGGCAACTTGTGAGAAAAGGGAAAAATACCTTCAGGCTTTGAATGATAGTCAAGAAGTAGAATGCAATGTCTGTTTGGAGCGTGTTCTTTCCAAGCCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTCAATGTGACCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGAATGGACACGAGTAATAATGGAACTGCTAATACAGTGAGAAAATGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATTCTACTAAGGAAGAAAAACAAGAAATTATTGATAACTACAAGGCAAACTGCAAACAAATTGATTGCAAGCATTTTAACCTCGGAAACGGGAATTGTCCATTTGGGGCTTGTTGCTTCTACAAGCACACTGTGAAGCCTGGCTCATACACATGGATACATCACAGGCCACCACCACCACCACAGCGGAGACAAAACAATCTTAATGAGATGTTGGACATGCTCAGCGATGTTGATTTAACTAGTGCTGAATATCTTTCTATCATGAGGGACTCGGATCTTTTCGACGATATGGATCCATTTGGGATGATAGATATATCTGATAGGCTTGCTGGTGAATCAGGTCTTTGTTTGGGCCCTTTTGATTCTGATGAAGAAGGGGTAGATTTTTTTCAGATGGCTGCATTGTCAGAAGCACTGGTTTCTGGTGTGGATGATTTTGGTCTTGAAGATTTTGATGATGAAGAGTTCAATCCTATGGAGGCTGCCTTGTTATCCATGATGATGCATTCTAACATAGATGATGAAGATGAAGATGAAGATGAAGAAGAATACAGTGATGAGTACTACTAG 1377 0.4052 MSNRVCKFYARGACLKGDQCDFIHERKDGVSSNICTYYQKGVCAYGSRCRYKHVKAYEATSSSSNGRHPPVSDSVLNQTTKGASSCVPKASKPSSSDKCARSSQHKNLVSSGNDVGQSSSSGATASGLLFCSFAAANCPLGNKCSRVHGNRCFYCRKFCLHPTDSEERENHLATCEKREKYLQALNDSQEVECNVCLERVLSKPKPSDCKFGLLPQCDHAFCLSCIRNWRNSAPTSGMDTSNNGTANTVRKCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKQIDCKHFNLGNGNCPFGACCFYKHTVKPGSYTWIHHRPPPPPQRRQNNLNEMLDMLSDVDLTSAEYLSIMRDSDLFDDMDPFGMIDISDRLAGESGLCLGPFDSDEEGVDFFQMAALSEALVSGVDDFGLEDFDDEEFNPMEAALLSMMMHSNIDDEDEDEDEEEYSDEYY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01535 458 SUPERFAMILY RING/U-box 184 262 - -
Vian11g01535 458 CDD RING-HC_MKRN 191 256 - -
Vian11g01535 458 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Vian11g01535 458 MobiDBLite consensus disorder prediction 81 100 - -
Vian11g01535 458 Gene3D - 1 63 - -
Vian11g01535 458 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Vian11g01535 458 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Vian11g01535 458 ProSiteProfiles Zinc finger RING-type profile. 193 256 IPR001841 -
Vian11g01535 458 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Vian11g01535 458 SMART c3hfinal6 125 150 IPR000571 GO:0046872
Vian11g01535 458 SMART c3hfinal6 285 313 IPR000571 GO:0046872
Vian11g01535 458 SMART c3hfinal6 31 55 IPR000571 GO:0046872
Vian11g01535 458 Coils Coil 272 292 - -
Vian11g01535 458 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Vian11g01535 458 Pfam Zinc finger, C3HC4 type (RING finger) 193 255 IPR018957 GO:0046872
Vian11g01535 458 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Vian11g01535 458 ProSiteProfiles Zinc finger C3H1-type profile. 285 314 IPR000571 GO:0046872
Vian11g01535 458 SMART ring_2 193 255 IPR001841 -
Vian11g01535 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 261 IPR013083 -
Vian11g01535 458 PANTHER MAKORIN-RELATED 1 356 IPR045072 GO:0000209|GO:0061630
Vian11g01535 458 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian11g01535 zf-C3HC4 1.8e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01535 K15687 - gmx:100788886 733.021