Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01529 ATGTTGCAGGGAGAGCTGGTGCAGAAGGACTTCAATATTGTAGAAGAAGCAGGAGGAATTGGTAAAGCAATAAAAAAACCCTTCACTGCAGTTGTGAGTAATAGTACTTTGGAGATACGTTTGTATTGGGCTGGAAAAGGGACAACTAGTCTCCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATACAAGTGGAACCTAACTTTACACCACCCTCAGAAAATGGAAGTGGCATATCTGCAGGAGCTGTGGCTGGAATTGTGGTTGCAGTAGCAATAGTTATCATCATTGTACTTGGTATTCTTTGGTGGAAAGGATGTCTAGGAAAGAAAAATTCTTTAGAAAAAGAGATAAGGAGTTTAGACCTGCGAACCGGTTTGTTTTCTTTAAGAGAAATCAAAGTAGCAACAAACAACTTTGATGCTGCAAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTCTATCAGATGGAACACTAGTAGCAGTGAAGCAACTTTCTTCTAAATCAAAGCAAGGAAATCGTGAGTTTATAACAGAGATAGGCATGATTTCTGCTTTGCAACATCCTTGTCTTGTTAAACTTTATGGATGCTGTGTGGAGGGTGATCAACTCTTATTGGTATATGAATATATGGAAAACAATAGCCTTGCTCGTGCTTTATTTGGACCTGAAGAACACCAAATAAGATTGGACTGGGCAACAAGATACAAGATATGTATTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCATAGAGACATCAAGACCACTAATGTGTTGCTTGATAAAGATCTCAACCCAAAGATATCAGACTTTGGTTTGGCCAAACTGGATGAGGAAGAAAATACTCATATTAGCACCCGAATAGCTGGAACATATGGATATATGGCTCCAGAATATGCCATGCATGGTTATTTGACTGATAAAGCAGACGTCTATAGCTTTGGAGTTGTTGTCTTGGAAATTATAAATGGAAGGAACAATACCATTCACCGTCCAAAAGAACAATCGTTCTCCATTCTTGAATGGGCAAATCTGTTGAAAGAGAAAGGTGATCTAATGGAGCTAGTTGATAGAAGATTGGGCACAGACTTCAACAAAGAGGAGGTGTTAGTCTTGATAAGGGTGGCTCTGTTGTGCACGAATGTTACTACACAACGTAGGCCAAACATGTCATCAGTGGTAAGCATGCTGGAAGGAAGAACTGTTATTGAGGAAGTGTTTTCAGAGGAAAATGATTTGGAAGAGAAGAAGATGGAGAAAATGAGGCAATACTACCAAGAGTTGAGTATCTCAAAGGATGAGCAATGGACTTCCTCATCTACTTCTGCAGCAGATCTTTATCCTGTAAACATCGATTCTTCTTACTTGCAAAAGAGAGGTTAG 1428 0.3943 MLQGELVQKDFNIVEEAGGIGKAIKKPFTAVVSNSTLEIRLYWAGKGTTSLPFRSVYGPLISAIQVEPNFTPPSENGSGISAGAVAGIVVAVAIVIIIVLGILWWKGCLGKKNSLEKEIRSLDLRTGLFSLREIKVATNNFDAANKIGEGGFGPVYKGCLSDGTLVAVKQLSSKSKQGNREFITEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEHQIRLDWATRYKICIGIARGLAYLHEESRLKVVHRDIKTTNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVVLEIINGRNNTIHRPKEQSFSILEWANLLKEKGDLMELVDRRLGTDFNKEEVLVLIRVALLCTNVTTQRRPNMSSVVSMLEGRTVIEEVFSEENDLEEKKMEKMRQYYQELSISKDEQWTSSSTSAADLYPVNIDSSYLQKRG 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01529 475 Gene3D Transferase(Phosphotransferase) domain 1 217 431 - -
Vian11g01529 475 ProSiteProfiles Protein kinase domain profile. 141 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01529 475 Pfam Protein kinase domain 143 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01529 475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 441 - -
Vian11g01529 475 Gene3D - 1 69 - -
Vian11g01529 475 CDD STKc_IRAK 147 414 - -
Vian11g01529 475 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 110 216 - -
Vian11g01529 475 FunFam Putative LRR receptor-like serine/threonine-protein kinase 217 424 - -
Vian11g01529 475 Gene3D Phosphorylase Kinase; domain 1 108 216 - -
Vian11g01529 475 SMART serkin_6 141 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01529 475 SUPERFAMILY Protein kinase-like (PK-like) 125 417 IPR011009 -
Vian11g01529 475 Coils Coil 418 438 - -
Vian11g01529 475 Pfam Malectin domain 2 64 IPR021720 -
Vian11g01529 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01529 Vian-Chr11 25517493 25519681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01529 2 460 Receptor kinase-like Gene Family AT1G53420 60.768 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian11g01529 Pkinase 5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01529 - - gmx:732563 767.303