Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01525 ATGCTGAAAACACAAAATCTTTCAGGCACTCTCCCACCTGAATTGACAGGGCTACCTCACCTTGAAGAAATTGACCTCACTCGCAATTATCTTAATGGAACAATACCTGTTGCATGGGGCTCCTCCAAACTTCGCATTATTTCTCTTCTTGGAAATCGACTTACTGGTCCCATCCCAAAAGAGATTGGAAACATCACAACCCTCGAAAGTTTGGTCCTTGAATTCAATCAATTCACTGGAAATATTACATCGGATCTTGGAAACCTTTCTAACCTCGAAAGATTGCATCTTACTTCTAACAACTTCACCGGAGAACTTCCTGAAACTTTGGCTAAGCTTACATCATTGAGAGAGCTCCGTCTTAATGACAATAACTTCTCTGGAAGGATACCCAGTTTTATTCAAAGATGGACAAATCTTGAAATATTAGAAATTCAAGGTAGTGGTTTAAGTGGGCCAATTCCTTCTGAAATTTCATTTCTGCACAACTTAGATGATTTGAGAATTACTGACTTGACTAATGGATCGGATTCCACTTTCCCACAAATTAATATGACAAAGTTGGAAACACTAGATCTTTCATACAACAACTTCACCTATAAAAACTCCGAAGCATGCCAAGAGACTGAAGGCAAAATGAACTTGTTTGAAAGCTTCCCAATGAGCCCAAGGGGAGCTGTTACTTGTCTGCCTAGTGGAAACTGTACGAGAACCTTTGATTATTTCCATATAAATTGTGGTGGTGAACAAGTGAAAAGTAGTGAAGGTATACTATACGACGAAAACTCGGATCCATCGGGAGCAGCAACATCTAAAAAGATATATGAAAACTGGGCCTTTAGCAATACTGGTCATTTCTTGGATGCTAATACTAATGCAGAAGTCTATATCCAAAAAAGTCAAAATACGCTTTCGATGACAGATTCTGCATTGTATCAGACTGCACGTGTATCTCCCATTTCCTTAACTTATTACGGAATGTGTCTGGAAAATGGAGAGTACACAGTATCACTGCATTTTGCAGAGATCATGTTCACTGATGATAACACATATAGCAGTCTTGGAAGACGTATATTTGATGTTTACATTCAGGAAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGGAAGAACATCACAAAAAGAATTTCAACTACTGTTAGTAATGGAACTTTAAATATTCGTTTTTATTGGGCTGGAAAAGGAACAACTGCTATCCCATATAAATCAGTATATGGGCCTCTTATATCAGCTATATCTGCCACTCGTGTAAACAGTTCCAGCAAAGGTCCACGTGACATGGCTATAGGGGTTGTAATTGGGATAGCAGTTTCTGCAATAATATTTGTCATACTTGTTGTACTTGCCTGGAGACTTCATATTGGCAAAAGAAATTCATTAACAAAAGTTAAAATGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAGTTTATAAATGAGATAGGGTTGATTTCTGCTTTGCAACACCCTTGTCTTGTTAAACTTTACGGTTGTTGTGTTGAGGGAAATCAGTTGTTGCTGGCACATATATTGAAAGAGAAAGGGAATCTGATGGAGCTTATTGATAGAAGATTAGGAACAAATTTCAATGAAAAAGAGGTTATGATGATGATAAAAGTGGGTCTTCTGTGCACAAATGCCACTGCAAACCTTAGACCTACCATGTCATCAATTCTTAGCATGCTTGAAGGAAAAACTGTTATTCCAGAATTTGTTTCAGATTCATCTGAAGTAATGGATGAAAAGAAGCAAGAGGCTATGAGACAATATTACTCTCAAATGGAAGAAAATGAGAGCAATGAAACACATAGATATGATAGTTCATCAAAAGATGGGCCATGGACTGCTTCTTCTTCATCAGCTGCAGATTTATATCCTGTCCATACTGATTCTTCTTATTGGGAGAAAAGAAATTAG 1956 0.3768 MLKTQNLSGTLPPELTGLPHLEEIDLTRNYLNGTIPVAWGSSKLRIISLLGNRLTGPIPKEIGNITTLESLVLEFNQFTGNITSDLGNLSNLERLHLTSNNFTGELPETLAKLTSLRELRLNDNNFSGRIPSFIQRWTNLEILEIQGSGLSGPIPSEISFLHNLDDLRITDLTNGSDSTFPQINMTKLETLDLSYNNFTYKNSEACQETEGKMNLFESFPMSPRGAVTCLPSGNCTRTFDYFHINCGGEQVKSSEGILYDENSDPSGAATSKKIYENWAFSNTGHFLDANTNAEVYIQKSQNTLSMTDSALYQTARVSPISLTYYGMCLENGEYTVSLHFAEIMFTDDNTYSSLGRRIFDVYIQEKLELKDFNIANEAGGVGKNITKRISTTVSNGTLNIRFYWAGKGTTAIPYKSVYGPLISAISATRVNSSSKGPRDMAIGVVIGIAVSAIIFVILVVLAWRLHIGKRNSLTKVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEGNQLLLAHILKEKGNLMELIDRRLGTNFNEKEVMMMIKVGLLCTNATANLRPTMSSILSMLEGKTVIPEFVSDSSEVMDEKKQEAMRQYYSQMEENESNETHRYDSSSKDGPWTASSSSAADLYPVHTDSSYWEKRN 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01525 651 SMART LRR_typ_2 18 42 IPR003591 -
Vian11g01525 651 SMART LRR_typ_2 113 137 IPR003591 -
Vian11g01525 651 SMART LRR_typ_2 89 112 IPR003591 -
Vian11g01525 651 SMART LRR_typ_2 185 208 IPR003591 -
Vian11g01525 651 FunFam Leucine-rich repeat receptor protein kinase EMS1 11 107 - -
Vian11g01525 651 Gene3D - 241 430 - -
Vian11g01525 651 Pfam Protein tyrosine and serine/threonine kinase 470 550 IPR001245 GO:0004672|GO:0006468
Vian11g01525 651 SUPERFAMILY Protein kinase-like (PK-like) 459 550 IPR011009 -
Vian11g01525 651 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 240 430 - -
Vian11g01525 651 Gene3D Ribonuclease Inhibitor 1 106 IPR032675 -
Vian11g01525 651 Pfam Malectin domain 242 425 IPR021720 -
Vian11g01525 651 Gene3D Ribonuclease Inhibitor 107 213 IPR032675 -
Vian11g01525 651 SUPERFAMILY L domain-like 3 201 - -
Vian11g01525 651 Gene3D Phosphorylase Kinase; domain 1 464 522 - -
Vian11g01525 651 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 108 173 - -
Vian11g01525 651 MobiDBLite consensus disorder prediction 604 634 - -
Vian11g01525 651 Pfam Leucine Rich repeat 185 199 IPR001611 GO:0005515
Vian11g01525 651 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 522 610 - -
Vian11g01525 651 Pfam Leucine rich repeat 67 126 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01525 Vian-Chr11 25445338 25454714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01525 521 607 Receptor kinase-like Gene Family AT1G53420 36.264 1.98e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian11g01525 Malectin 2.3e-46 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01525 - - gmx:100785451 679.093