Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01524 ATGAAGAAGATCACTCCTTCTCAATTTCTCTTCCTTTCACTCCTTCTGCTATGCTTCACATCCCTTGCTTTTGGACAAAATATCACTCACCCAGACGAAGTGAAAGCTCTGAAAGATATAGGCAACATCCTTGGTAATAAGAACTGGGACACAAATATAGATCCATGCAGTAATAAACCTCCCTGGAATGTAACTATTGACAAAGACAAAGCCAACTATGTCAGATGCAACTGTTCTATCTCCATTGACGGCTTTTGTCATGTTGTTTCAATAAGGCTGAAAGCACAAAATCTTACGGGCACGCTCCCACCTGAATTGACAGGGCTACCTTACCTTGAAGAAATTGACCTCACTCGCAATTATATTAATGGCACAATACCTGTTGGATGGGGCTCCTCTAAACTTCGCATTATTTCTTTTCTTGGAAATCGACTTACTGGTCCCATCCCTAAAGAGATTGGAAACATCATAACCCTCGAAAGTTTGGTCCTTGAATTCAATCAGTTCACTGGAAATATTACACCGGATCTTGGAAACCTTTCTCACCTTCAAAGATTGCATCTTACTTCTAACAACTTCACGGGAGAACTTCCTGAAACCTTGGCTAAGCTTACATCATTGAGAGAGCTCCGTCTTAATGACAATAACTTCTCTGGAAGGATACCCAGTTTTATTCAAAGATGGACAAATCTTTCAATATTAGAAATTCAAGGCAGTGGTTTAAGTGGGCCAATCCCTTCTGAAATTTCATTTCTGCAAAACTTAAATGATTTGAGAATTACTGACTTGATTAATGGATCGGATTCTACTTTCCCACAAATTAATAATATAACAAAGTTGGAAACACTGATACTAAGGAACTGCCAAATTAGCGACGAATTACCTTCGTATCTTGAGAACATGACAGGCATTGAAACATTAGACCTAAGCTTTAACAAATTACGCGGAAAGATTCCAGAGAACGTTGGAAGCTTATCAAAACTGTCACACGTATATTTCACTGGAAACCAACTTACTGGACCCCTACCTATGTGGGTAGCTGGAGGACGTAAATCTATAGATCTTTCATACAACAACTTCACTGATAAAAACTCCTCCGTGGCATGCCAAGAGAATAAAGAAGTGAACTGGTTTGCAAGCTTCCCAATGAGCCAAAATGGACCTGTTACATGTCTGACTAGTGCAAACTGTACAAGACTCTTAGACTATTTTCATATAAACTGTGGTGGTGGACAAGAGACAAGCAGTGAGGGTATAGTGTATGATGATGACTTGGATCATGCAGGGGCAGCAACATCTAAAATGCCCAGAGAAAACTGGGCATTTAGCAATACCGGTCATTTCTTGGGTGGTCATAATGAACTAGACTATATCCAGCAAAGTCAAAATACGCTTTCTATGATTGATTCTGCATTGTATCAGACTGCACGTGTATCTCCCATTTCTTTGACTTATTACGGAACGTGTCTGGAAAATGGAGAGTTCACGGTATTGCTGCATTTTGCAGAGATCATGTTCACTGATGATAACACATATAGCAGTCTTGGAAGACGTATATTTGATGTTTACATTCAGGGAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGGAAGAACATCACAAAAAGAATTTCAACTACTGTTACGAATAACTCTTTAGAGATTCGATTTTATTGGGCTGGAAAAGGAACAACTGCTATCCCATATAGATCAGTATATGGCCCTCTTATATCAGCTATATCTGTCACTCGTGTAAACAGTTCCAGAACAGATTCAGGTGGCATGGCTATAGGGGTTGCAATTGGGATAGCAGTTTCTGCAATAATATTAGTCATACTGGTTGTACTTGCCTGGAGACTTCATATTGGCAAAAGAAATTCATTAGCAAAAGAGTTAAAGCATTTGAATTTGCAAATGGGATTATTTCCTATGCGTAAAATCAAAGTTGCAACGAATAACTTTGATATTTCTAATAAAATCGGGGAAGGAGGCTTTGGTCCTGTCTACAAGGGTACTTTATCAGATGGCACAAGAATAGCAGTTAAGATGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAGTTTATAAATGAGATAGGGTTGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTACGGTTGTTGTGTTGAGGAAGATCAGTTGTTGCTAGTATACGAATATATGGAAAATAATAGCCTTGCACATGCTTTATTTAGAAATGAAGAATGTTGTTTGCGATTGGATTGGGCAACCAGGTACAAGATTTGTGTTGGTATAGCTAGAGGTTTGGCTTTCCTACATGAAGAATCAAGATTAAAAGTTGTTCACAGAGACATAAAGGCCACTAATGTGTTGTTAGACAAAGATCTGAATCCAAAGATATCTGATTTTGGTCTTGCAAAGCTTGATGATGAGGATAATACCCACATAAGCACAAGAATAGCTGGGACTTATGGATATATGGCACCAGAATATGCAATGCATGGTTATTTAACTGATAAAGCAGATGTCTATAGTTTTGGAGTGGTTGCCTTGGAAATTGTAACTGGAAAGAATAATACCATCCCTCGACCCAAGCAAGAAGCATTGCATCTTTTAGATTGGGCACGTTTGTTGAAAGAGAAAGGGAATCTGATGGAGCTTATTGATGGAAGGTTAGGATCAAATTTCAATGAAAAAGAGGTTATGATGATGATAAAAGTGGGTCTTCTGTGCACAAATGCCACTGCAAACCTTAGACCTACCATGTCATCAGTACTTAGCATGCTTGAAGGAAAAGCTGTGATACCAGAATTTATTTTAGATTCATCTGAAATAATGGATGAAAAGAAGCAAGAGGTTATAAGACAATATTACTCTCAAATGGAAGAAACTGATAGCAGTGAAACACATGGAAATAGTTCATCAAAAGATGGGCCATGGACTGCTTCGTCTTCATCAGCTGCAGATTTATATCCTGTTTCATATTGA 2994 0.3844 MKKITPSQFLFLSLLLLCFTSLAFGQNITHPDEVKALKDIGNILGNKNWDTNIDPCSNKPPWNVTIDKDKANYVRCNCSISIDGFCHVVSIRLKAQNLTGTLPPELTGLPYLEEIDLTRNYINGTIPVGWGSSKLRIISFLGNRLTGPIPKEIGNIITLESLVLEFNQFTGNITPDLGNLSHLQRLHLTSNNFTGELPETLAKLTSLRELRLNDNNFSGRIPSFIQRWTNLSILEIQGSGLSGPIPSEISFLQNLNDLRITDLINGSDSTFPQINNITKLETLILRNCQISDELPSYLENMTGIETLDLSFNKLRGKIPENVGSLSKLSHVYFTGNQLTGPLPMWVAGGRKSIDLSYNNFTDKNSSVACQENKEVNWFASFPMSQNGPVTCLTSANCTRLLDYFHINCGGGQETSSEGIVYDDDLDHAGAATSKMPRENWAFSNTGHFLGGHNELDYIQQSQNTLSMIDSALYQTARVSPISLTYYGTCLENGEFTVLLHFAEIMFTDDNTYSSLGRRIFDVYIQGKLELKDFNIANEAGGVGKNITKRISTTVTNNSLEIRFYWAGKGTTAIPYRSVYGPLISAISVTRVNSSRTDSGGMAIGVAIGIAVSAIILVILVVLAWRLHIGKRNSLAKELKHLNLQMGLFPMRKIKVATNNFDISNKIGEGGFGPVYKGTLSDGTRIAVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEEDQLLLVYEYMENNSLAHALFRNEECCLRLDWATRYKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVTGKNNTIPRPKQEALHLLDWARLLKEKGNLMELIDGRLGSNFNEKEVMMMIKVGLLCTNATANLRPTMSSVLSMLEGKAVIPEFILDSSEIMDEKKQEVIRQYYSQMEETDSSETHGNSSSKDGPWTASSSSAADLYPVSY 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01524 997 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 629 735 - -
Vian11g01524 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Vian11g01524 997 Gene3D - 403 592 - -
Vian11g01524 997 SUPERFAMILY L domain-like 83 362 - -
Vian11g01524 997 CDD STKc_IRAK 666 933 - -
Vian11g01524 997 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 591 - -
Vian11g01524 997 Gene3D Ribonuclease Inhibitor 31 190 IPR032675 -
Vian11g01524 997 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Vian11g01524 997 MobiDBLite consensus disorder prediction 958 997 - -
Vian11g01524 997 FunFam Putative LRR receptor-like serine/threonine-protein kinase 736 943 - -
Vian11g01524 997 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 363 - -
Vian11g01524 997 SMART serkin_6 660 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01524 997 Pfam Protein tyrosine and serine/threonine kinase 662 929 IPR001245 GO:0004672|GO:0006468
Vian11g01524 997 Pfam Malectin domain 404 586 IPR021720 -
Vian11g01524 997 Gene3D Ribonuclease Inhibitor 266 380 IPR032675 -
Vian11g01524 997 Gene3D Ribonuclease Inhibitor 191 265 IPR032675 -
Vian11g01524 997 MobiDBLite consensus disorder prediction 959 997 - -
Vian11g01524 997 Gene3D Transferase(Phosphotransferase) domain 1 736 941 - -
Vian11g01524 997 ProSiteProfiles Protein kinase domain profile. 660 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01524 997 SUPERFAMILY Protein kinase-like (PK-like) 644 952 IPR011009 -
Vian11g01524 997 Gene3D Phosphorylase Kinase; domain 1 624 735 - -
Vian11g01524 997 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 968 - -
Vian11g01524 997 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 30 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01524 Vian-Chr11 25417354 25427622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01524 24 969 Receptor kinase-like Gene Family AT1G53420 51.771 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian11g01524 PK_Tyr_Ser-Thr 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01524 - - gmx:100785451 1362.82