Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01523 ATGATGAAGAAGATCACTCTCTCTCAATTTCTCTTCCTTTTAGTCCTTCTAATATGCTTCACATCCCTTGCCTTTGGTCAAAATACCACTCACCCAGATGAAGTGGAAGCTCTGAAAGATATAGGCAACACCCTTGGAAATATGAATTGGGACACAAATATAGATCCATGCAGTAATAAGCCTCCCTGGAATGTAACTCCGGACGGTGATAATGCCAACACTCTCCAATGCAATTGCACTATCGCCGGTGACAACTTCTGCCATGTTGTTTCAATATTGCTGAAGACACAAAATCTTAGAGGCACTCTCCCACCTGAATTGATAAGGCTACCTTACCTTGAAGAAATTGACCTCACTCGCAATTATCTTAATGGCACAATACCTGTTGCATGGGGCTCCTCCAAACTTCGCAAAATTTCTCTTCTTGCAAATCGACTTACTGGTCCCATCCCAAAAGAGATTGGAAACATCACAACCCTCGAAAGTTTGGTCCTTGAATTCAATCAATTCACTGGAAATATTACATCGGATCTTGGAAACCTTTCTCACCTTCAAAGATTGTATCTTACTTCTAACAACTTCACTGGAGAACTTCCTGAAACCTTGGCTAAGCTTACATCATTGAGAGAGCTCCGTCTTAATGACAATAACTTCTCTGGGAGGATACCCAGTTTTATTCAAAGATGGACAAATCTTACAATATTGGGAGCTGTTACTTGTCTGATTAGTGGAGACTGTGCGAGAACCTTAGACCGTTTCCATATAAATTGTGGTGGTGGACAAGAGACAAGCAGTGAGGGTATAGTGTATGATGATGACTTGGATTCATCAGGGGCAGCAACATCTAAAAAGCTCAAAGAAAACTGGGCATTTAGCAATACTGGTCATTTCTTGGGTGGTGATAATAAAGAAGCCTATATCCAGCAAAGTCAAAATACGCTTTCTATGACTGATTCTGCATTGTATAGGACTGCACGTGTATCTCCCATTTCCTTGACTTATTACGGAATGTGTCTGAAAAATGGAGAGTACACAGTATCACTGCATTTTGCAGAGATCATGTTCACTGATGATAACACATATAGCAGTCTTGGAAGACGTATATTTGATGTTTACATTCAGGAAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGGAAGAACATCACAAAAAGAATTTCAACTACTGTTAGTAATGGAACTTTAAAGATTCGATTTTATTGGGCTGGAAAAGGAACAACTGCTATCCCATATAGATCAGTATATGGGCCTCTTATATCAGCTATATCTGCCACTCGTGTAACAGATTCAGGTGGCATGGCTGTAGGGGTTGCAATTGCGATAGCAGTTTCTGCAATAATATTTGTCATTCTTGTTGTACTTGCTTGGAGACTTCATATTAGGAAAAAAAATTCATTAGCAAAAGTTAAAATGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAGTTTATAAATGAGATAGGGTTGATTTCTGCTTTGCAACACCCTTGTCTTGTCAAACTTTACGGTTGTTGTGTTGAGGGAAATCAGTTGTTGCTGGCACATATATTGAAAAAGAAAGGGAATCTGATGGAGCTTATTGATAGAAGATTAGGAACAAATTTCAATGAAAAAGAGGCTATGATGATGATAAAAGTGGGTCTTCTGTGCACAAATGCCACTGCAAACCTAAGGCCTACCATGTCATCAGTTCTTAGCATGCTTGAAGGAAAAACTGTGATTCCAGAATTTGTTTCAGATTCATCTGAAGTAATGGATGAAAAGAAGCAAGAGGCTATGAGACAATATTACTCTCAAATGGAAGAAAATGAGAGCAATGAAACACATAGAAATGATAGTTCATCAAAAGATGGGCCATGGACTGCTTCGTCTTCATCAGCTGCAGATTTGTATCCTGTTCATATTGATTCTTCTTATTGGGAGAAAAGAAATTAG 1974 0.3891 MMKKITLSQFLFLLVLLICFTSLAFGQNTTHPDEVEALKDIGNTLGNMNWDTNIDPCSNKPPWNVTPDGDNANTLQCNCTIAGDNFCHVVSILLKTQNLRGTLPPELIRLPYLEEIDLTRNYLNGTIPVAWGSSKLRKISLLANRLTGPIPKEIGNITTLESLVLEFNQFTGNITSDLGNLSHLQRLYLTSNNFTGELPETLAKLTSLRELRLNDNNFSGRIPSFIQRWTNLTILGAVTCLISGDCARTLDRFHINCGGGQETSSEGIVYDDDLDSSGAATSKKLKENWAFSNTGHFLGGDNKEAYIQQSQNTLSMTDSALYRTARVSPISLTYYGMCLKNGEYTVSLHFAEIMFTDDNTYSSLGRRIFDVYIQEKLELKDFNIANEAGGVGKNITKRISTTVSNGTLKIRFYWAGKGTTAIPYRSVYGPLISAISATRVTDSGGMAVGVAIAIAVSAIIFVILVVLAWRLHIRKKNSLAKVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEGNQLLLAHILKKKGNLMELIDRRLGTNFNEKEAMMMIKVGLLCTNATANLRPTMSSVLSMLEGKTVIPEFVSDSSEVMDEKKQEAMRQYYSQMEENESNETHRNDSSSKDGPWTASSSSAADLYPVHIDSSYWEKRN 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01523 657 Gene3D Ribonuclease Inhibitor 34 159 IPR032675 -
Vian11g01523 657 SUPERFAMILY Protein kinase-like (PK-like) 465 556 IPR011009 -
Vian11g01523 657 Gene3D - 255 440 - -
Vian11g01523 657 Pfam Protein tyrosine and serine/threonine kinase 474 556 IPR001245 GO:0004672|GO:0006468
Vian11g01523 657 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515
Vian11g01523 657 Gene3D Phosphorylase Kinase; domain 1 466 528 - -
Vian11g01523 657 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 250 440 - -
Vian11g01523 657 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 528 617 - -
Vian11g01523 657 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 36 198 - -
Vian11g01523 657 MobiDBLite consensus disorder prediction 593 638 - -
Vian11g01523 657 MobiDBLite consensus disorder prediction 594 608 - -
Vian11g01523 657 Pfam Malectin domain 253 435 IPR021720 -
Vian11g01523 657 Gene3D Ribonuclease Inhibitor 165 254 IPR032675 -
Vian11g01523 657 SUPERFAMILY L domain-like 58 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01523 Vian-Chr11 25403490 25414302 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01523 527 642 Receptor kinase-like Gene Family AT1G07650 43.966 1.61e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian11g01523 Malectin 3.9e-46 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01523 - - vum:124835551 503.827