Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian11g01517 | ATGAAGATTCAGTGCAACGTTTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCTGATGAGGCTGCTCTGTGTTGGGAGTGTGATGAAAAGGTTCACGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTTCCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAGGATCGGGCACTGTTCTGCAGAAAATGTGATTTGGCAATACATACAGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACCGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGTGCATCCTCATCGTCTTTGAAGGCAGATTCTGGGGAGAAAATTTCTGATACAAAGTCGTCTTCTATCTCTAGAAAGGTTTCCACAGAACCTCAGAACTCAGATTACAATGAATTGTTACCTATCGAAGGTGGAGGAGTTGGGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACCGTTGGAAATATCTCACAGTGGACAATAGATGAATTTATTGGCCTAAACGAGTTCAGTCAGAATTATGATTACATGGAAGGATCAACAAGGGCTGACAGTGGTAAGTTAGGGGATTCTGATTCTCCGGAGGAAATGAAGGAGGAGGAGGACTATTTGGAACATGTTCCAGATTCTTCATGGACAGTTCCACAGATCCCTTCACCACCAACAGCTTCTGGGTTACACTGGCCAAAACACCTTCAGTATTCATCTGATAGTCTTCTGTTTGTTCCAGACATAAGCATTTCTCACATGCAACACTCTCATCAGATCAGTAGTACTTTTTCTAGACGCCGGAGGCACCTTGAATAA | 870 | 0.4506 | MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALFCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSSSLKADSGEKISDTKSSSISRKVSTEPQNSDYNELLPIEGGGVGGFPPAKESFGGGSTVGNISQWTIDEFIGLNEFSQNYDYMEGSTRADSGKLGDSDSPEEMKEEEDYLEHVPDSSWTVPQIPSPPTASGLHWPKHLQYSSDSLLFVPDISISHMQHSHQISSTFSRRRRHLE | 289 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian11g01517 | 289 | Gene3D | Classic Zinc Finger | 1 | 92 | - | - | |
Vian11g01517 | 289 | MobiDBLite | consensus disorder prediction | 201 | 239 | - | - | |
Vian11g01517 | 289 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Vian11g01517 | 289 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 268 | - | - | |
Vian11g01517 | 289 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Vian11g01517 | 289 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
Vian11g01517 | 289 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Vian11g01517 | 289 | MobiDBLite | consensus disorder prediction | 209 | 228 | - | - | |
Vian11g01517 | 289 | MobiDBLite | consensus disorder prediction | 111 | 147 | - | - | |
Vian11g01517 | 289 | FunFam | B-box zinc finger protein 22 | 1 | 93 | - | - | |
Vian11g01517 | 289 | MobiDBLite | consensus disorder prediction | 111 | 151 | - | - | |
Vian11g01517 | 289 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
Vian11g01517 | 289 | Pfam | B-box zinc finger | 54 | 95 | IPR000315 | GO:0008270 | |
Vian11g01517 | 289 | CDD | Bbox1_BBX-like | 56 | 99 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian11g01517 | Vian-Chr11 | 25279923 | 25282909 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian11g01517 | 1 | 288 | C2C2-CO-like Transcription Factor Family | AT1G78600 | 48.160 | 3.82e-90 | 269 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | DBB | Vian11g01517 | zf-B_box | 3.1e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian11g01517 | - | - | gmx:100790959 | 495.738 |