Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01514 ATGACTTGTTTTCCTTTATTTTCCAGTAAGTCATCTTCTTCAGCAAGAAAAGACCCAGAAATTGATGAAGGCATTCATAATGTTAAACTCTACTCCTACAAACAATTAAGAAATGCCACTGATGACTTCAGTCAAGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGACTTAAAGATGGAAAAGTTGCTGCAATAAAAGTTCTTGCAGCAGAATCAAGACAAGGAGTGAAGGAGTTCTTGACAGAGATTAATGTAATCTCAGAGATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGCAGTGTTGACAAAAATAGCAGAATATTAGTCTACAATTACCTTGAGAATAATAGCCTGTCACAAACTCTTCTAGGTGGAAATCACAATAAAATGCACTTTGATTGGCGAACAAGATGCAAAATAAGTATTGGTATTGCTCGTGGACTGGCCTATCTTCATGAAGAAGTAAGGCCGCATATTGTTCACAGGGATATAAAAGCAAGCAACATCCTCCTTGATAAAGATCTTACACCCAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTTAGCACCCGAGTAGCAGGAACAATAGGTTATTTGGCACCCGAGTATGCAATAGGGGGGAAGCTAACAAGGAAAGCAGATGTTTATAGCTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGAAGATGTAACACGAACACACGATTACCAATAGAAGAACAATTTCTTCTAGAGAGGACTTGGGAACTTTATGAGAGAAAGGAATTGGTGGGACTGGTAGATACATCACTGGACGGGGAATTCGATGCCGAGCAGGCTTGTAAGTTTATGAAGATTGGTCTTCTTTGCACTCAGGAATCGCCAAAGCTTCGGCCATCAATGTCTTCTGTGGTGAAGATGCTCACTGGAAAAATAGATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTTCTGATTTCATGGACCTCAAAGTAAGAAGGAACGAAGAAAGTAGTAGTTATGTGAAGAATTCATCTACCTACGACACATACTCTTCTTCAGACAACCATGACACTACTATGTCTTCTGTCACAACTACAACTTTTGCTGCTGTATATGATGAAAGCATGTGA 1155 0.3922 MTCFPLFSSKSSSSARKDPEIDEGIHNVKLYSYKQLRNATDDFSQANKIGEGGFGSVYKGRLKDGKVAAIKVLAAESRQGVKEFLTEINVISEIEHENLVKLYGCSVDKNSRILVYNYLENNSLSQTLLGGNHNKMHFDWRTRCKISIGIARGLAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRCNTNTRLPIEEQFLLERTWELYERKELVGLVDTSLDGEFDAEQACKFMKIGLLCTQESPKLRPSMSSVVKMLTGKIDVDDSKITKPALISDFMDLKVRRNEESSSYVKNSSTYDTYSSSDNHDTTMSSVTTTTFAAVYDESM 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01514 384 CDD STKc_IRAK 49 316 - -
Vian11g01514 384 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01514 384 Gene3D Transferase(Phosphotransferase) domain 1 119 328 - -
Vian11g01514 384 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01514 384 Pfam Protein kinase domain 44 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01514 384 FunFam cold-responsive protein kinase 1 119 330 - -
Vian11g01514 384 SUPERFAMILY Protein kinase-like (PK-like) 21 314 IPR011009 -
Vian11g01514 384 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 353 - -
Vian11g01514 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vian11g01514 384 FunFam cold-responsive protein kinase 1 14 118 - -
Vian11g01514 384 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Vian11g01514 384 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01514 Vian-Chr11 25224045 25226521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01514 31 371 Receptor kinase-like Gene Family AT1G53430 52.199 5.81e-110 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian11g01514 Pkinase 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01514 - - gmx:100782320 675.626