Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01510 ATGAGCAACATAAGCATGGTAGAGGCAAAGTTGCCACCAGGGTTCAGGTTCCATCCAAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTCACACACAATGATTCCCTTCTCATGATAGATGTTGACCTTAACAAGTGTGAACCTTGGGATATTCCTGACACAGCATGTGTGGGAGGGAAAGAGTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGATTACGCACAAACCGTGCCACTGCCTCAGGGTACTGGAAGGCCACAGGGAAGGACAGGCCTATCCTACGCAAGGGCACCCTTGTTGGCATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGAAAAACTGAGTGGGTGATGCATGAGTTTCGCATTGAAGGGCCCCATGGACCTCCTAAAGTTTCTTCTTCTAAGGAAGACTGGGTTTTGTGTAGAGTGTTCTACAAAAACAGAGAAGTTTCAGCCAAACCTAGCATGGGTAGCTGCTATGAAGACACAGGCTCTTCATCTCTTCCTGCATTAATGGACTCTTACATTAGTTTTGATCAAACTCAAGCTCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGAACCAAGCAAACCCTATTTTCAACCACATGACAACCATGGAGCCTAAATTACCTGCGACTGCATATGGAGGAGGAGCACCGAATTTGGGTTACTGCTTAGACCCTTTATCCTGTGACAGAAAAGTGTTGAAAGCTGTTTTGAGTCAGATCACAAAGATGGAAAGGAATCCTCTGAACCAAAGTCTCAAAGGGTCTCCAAGCTTTGGGGAAGGAAGCTCAGAGAGTTATTTATCTGAAGTGGGGATGCCTCACCTTTGGAACAATTACTGA 903 0.4551 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHNDSLLMIDVDLNKCEPWDIPDTACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKVSSSKEDWVLCRVFYKNREVSAKPSMGSCYEDTGSSSLPALMDSYISFDQTQAHADEFEQVPCFSIFSQNQANPIFNHMTTMEPKLPATAYGGGAPNLGYCLDPLSCDRKVLKAVLSQITKMERNPLNQSLKGSPSFGEGSSESYLSEVGMPHLWNNY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01510 300 FunFam NAC domain-containing protein 100-like 20 162 - -
Vian11g01510 300 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Vian11g01510 300 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 207 - -
Vian11g01510 300 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Vian11g01510 300 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Vian11g01510 300 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01510 Vian-Chr11 25186222 25190441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01510 2 298 NAC Transcription Factor Family AT1G56010 60.568 1.41e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian11g01510 NAM 1.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01510 - - gmx:100301890 586.26