Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01497 ATGGCCTCTGCCAGTGCCACTACTCTCTTCTCCTCTAACCCCATCTTTCCCTCTGATTACCACTCTCTCTCCCCCTCTCCAACCATTCCTAAATCCTTCACTGGCCTTTGCAAGCCCTTCCATTCCAGGGTTCCCACTTCCATCCCCTGCTTCCGTTGCAGAAGACCAAAGTTCTTTGTTACAGCCACTGTAATAAAGTGGAGATGTCCAAAGCAAACCATCCCTCCCAATTCTGATACTGGTTTCCAAAAGAAACTCCTCTACCTAGAATCCATTGGCATTGACTCTTTCTCCCTTATTGAAAACCATCCAATGCTGATCACTACCTCTCTTACAGACATAAAATCGACTGTGGAATATATCACCTCCATGGATTTCACGGCAACCGAGTTCCGGCGTATGGTTGGCATGTGCCCGGAGATTCTGACCACCAATGTCTCTGACATCATACCGGTGTTCACCTTCCTTCATCGCGAGGTACATGTGCATTGTTCAGACATCAAGCGGGTCATAAATCGGCGTCCCAGGTTGCTTGTCTGCAGTGTCAGTAAGCGACTTCGTCCTACCCTATACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCATACTGACTTGCTATCATGTAGTGTTGAAGAAAAGTTCATGCCGAGAGTTGATTACTTTGAGAATATTGGGTTTTCTCGCCGTGATGCAACTTTAATGTTTCGCAGATTTCCTCAGCTGTTTTGTTATAGTATTAAAAATAATTTGGAGCCTAAATACAGTTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGCTGATAGAATTTCCACAATATTTCTCATTTAGCCTTGAGAATAGAATTAAGCCTAGGCATAAAAAGTGTGTAGAAATGGGGCTGTGTTTTCCTCTCCCTGCCTTGTTAAAAACAAAGGAAGTGAAATTTCAAAGTAGATTGGAAGTATTTGTAAATTCTTCAACACCCTTGAAAACATCCCCTCTGTGGTGTGCTGGCTCTGATTTTTATCAAGTATAG 1026 0.4337 MASASATTLFSSNPIFPSDYHSLSPSPTIPKSFTGLCKPFHSRVPTSIPCFRCRRPKFFVTATVIKWRCPKQTIPPNSDTGFQKKLLYLESIGIDSFSLIENHPMLITTSLTDIKSTVEYITSMDFTATEFRRMVGMCPEILTTNVSDIIPVFTFLHREVHVHCSDIKRVINRRPRLLVCSVSKRLRPTLYFLQSIGIEEVNKHTDLLSCSVEEKFMPRVDYFENIGFSRRDATLMFRRFPQLFCYSIKNNLEPKYSYFVVEMGRDLKELIEFPQYFSFSLENRIKPRHKKCVEMGLCFPLPALLKTKEVKFQSRLEVFVNSSTPLKTSPLWCAGSDFYQV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01497 341 FunFam Transcription termination factor MTEF1, chloroplastic 156 320 - -
Vian11g01497 341 Gene3D Transcription termination factor 3, mitochondrial 138 322 IPR038538 -
Vian11g01497 341 PANTHER CGI-12 PROTEIN-RELATED 97 320 IPR003690 GO:0003690|GO:0006355
Vian11g01497 341 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Vian11g01497 341 SMART mt_12 168 199 IPR003690 GO:0003690|GO:0006355
Vian11g01497 341 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Vian11g01497 341 SMART mt_12 234 266 IPR003690 GO:0003690|GO:0006355
Vian11g01497 341 SMART mt_12 200 229 IPR003690 GO:0003690|GO:0006355
Vian11g01497 341 SMART mt_12 97 127 IPR003690 GO:0003690|GO:0006355
Vian11g01497 341 Pfam mTERF 77 166 IPR003690 GO:0003690|GO:0006355
Vian11g01497 341 Pfam mTERF 159 313 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian11g01497 mTERF 9.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01497 K15032 - gmx:100794678 619.002