Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01491 ATGTCGCGGAAGGGTTTGATGGAGCAAGACCTGAGTAAGTTGGATGTGACAAAGTTGCATCCACTTTCTCCCGAAGTCATATCTCGGCAAGCTACTATTAATATTGGCACTATTGGTCATGTGGCACATGGCAAGTCAACAGTTGTGAAAGCAATATCAGGTGTCCAGACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATCACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGGAAAGAAGATGGTCCTATGTGTGATGTTCCGGGGTTTGAAAACAGCAAGATGAAATTGCTGAGACATGTTTCATTTGTGGATTGTCCGGGACATGATATTCTCATGGCTACTATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTATTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACCTCTGAGCACTTAGCTGCTGTGGAAATTATGCGTCTACAGCATATAATAATCCTTCAGAACAAGGTTGACTTGATTCAAGAAAATGTGGCAATCAATCAGCATGAAGCAATTTCAAAGTTTATACAGGGAACTGTTGCCGATGGTGCACCAGTAGTACCCATTTCAGCACAGTTAAAGTATAATATTGATGTTGTGTGCGAGTATATTGTAAAGAAGATCCCAATCCCTGAGAGGAACTTTGTTTCTCCACCTAACATGATTGTAATCCGATCATTTGATGTCAATAAACCTGGTTTTGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTGAATCAATTCATTGAAGTTCGACCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCCGATGCACACCAATATACTCAAGAATAGTTTCATTGTATGCCGAACAAAATGAGCTTCAATTTGCTGTACCTGGAGGCCTAATTGGTGTTGGGACAACAATGGATCCCACACTGACACGTGCCGATAGGTTGGTAGGTCAAGTTCTAGGAGAGGTTGGATCACTACCTGAGGTAAACTTTTTCCTGCTCAGACGGCTTCTTGGGGTCCGAACAAAAGGGTCAGAGAGACAAGGGAAGGTATCGAAGCTGGCGAAGGGAGAGATGCTAATGTTGAACATAGGATCAATGTCAACGGGGGCTAGAGTAATTGCTGTGAGAAATGACTTGGCAAAGTTGCAACTTACATCCCCTGTCTGCACTAGCAAGGGTGAGAAGATAGCACTTAGTCGACGTGTTGAGAAGCATTGGCGTCTTATTGGATGGGGCCAAATCCAAGCAGGAATCACCCTTGACGTCCCTCCTGCCCCCCATTTCAGTTGA 1383 0.436 MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDGPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVIAVRNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPHFS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01491 460 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Vian11g01491 460 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Vian11g01491 460 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Vian11g01491 460 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Vian11g01491 460 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Vian11g01491 460 FunFam Eukaryotic translation initiation factor 2 subunit gamma 30 240 - -
Vian11g01491 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 236 IPR027417 -
Vian11g01491 460 SUPERFAMILY Translation proteins 240 354 IPR009000 -
Vian11g01491 460 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Vian11g01491 460 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Vian11g01491 460 Pfam Initiation factor eIF2 gamma, C terminal 358 445 IPR015256 -
Vian11g01491 460 Gene3D Translation factors 242 354 - -
Vian11g01491 460 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 358 446 IPR009001 -
Vian11g01491 460 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Vian11g01491 460 CDD eIF2_gamma_III 358 445 IPR015256 -
Vian11g01491 460 Gene3D Translation factors 355 449 - -
Vian11g01491 460 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Vian11g01491 460 FunFam Eukaryotic translation initiation factor 2 subunit gamma 241 354 - -
Vian11g01491 460 Gene3D - 30 240 IPR027417 -
Vian11g01491 460 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 453 - -
Vian11g01491 460 FunFam Eukaryotic translation initiation factor 2 subunit gamma 355 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01491 Vian-Chr11 24930584 24934183 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01491 1 457 Eukaryotic Initiation Factors Gene Family AT1G04170 89.871 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01491 K03242 - gmx:100805852 896.73