Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01489 ATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCTCCGGTTCAGTCTCCGGCTCTTCCTCTCGCTCCTCATCTCCCTCCTCTTCTCGCTCCTCTGGCTCGCACACTCGCTCCCGCTCCCGCTCTCCCTCGCGCTCCAGATCTTTCTCATCCTCCTCCTCTCCCTCCCGCAGCTCCCGCAGCCGCAGCCCTCCGCCCCAGAGGCGCAGAAGTCCCGCTGAAGCAGCAGCAGCAGCAGCTAGGCGTGGTCGGTCTCCTCCACCTCAGTCAAAGAGAGCTTCACCTCCCCCAAGGAAACCTTCTCCTGTACGGGAATCACTAGTTCTTCATGTGGAAAAGCTCAGCAGAAATGTCAATGAGAGTCATTTGAAGGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATAGATCGAGCTGTCAATCTTCCAAAGGGATATGCATATGTGCAGTTCAAGACTAGAGAGGATGCTGAAAAAGCCTTATTATACATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTTTACCTCCTAGACAGAAAGTTTCACCACCCCCAAAGGCTTCTGTTGCTGCTCCAAAGAGAGACACCCCCAGGACTGATAATGCTAGTGCAGATGTTGACAAGGATGGGCCAAAGCGTCAGAGAGAATCACCTCGAAGAAAGCCTCCCTCACCACGGAGGAGATCTCCTGTACCTCGAAGAGCTGGATCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTTCGTCGCCGATTAGACTCTCCTTATCGTCGTGGAGGAGATACCCCTCCTAGGAGGCGGCCTGTATCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGACGCATTAGATCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGCCCAGGGCGGCGACGTTCACCTCCTCCTCCTCCTCCTCCTCGGCGCCGATCACCACCACCTAGACGTGCTCGCAGTCCTCCTAGAAGGTCTCCAATTGGTCATAGACGCACTCGCTCTCCATTACGTAGGTCAGCACGTTCAAGGTCGAGGTCTTTCTCACCTCGCAGAGGTAGGCCACCTGTAAGGCGTGGGAGGTCATCATCGTACTCAGATTCACCAAGTCCACGCAAGGTTTCCAGGAGATCAAAGAGTCGCAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAATAGTAGCAGCAGCAGTTCACCACCACCAGCTCGCAAACCATAG 1263 0.5471 MAKPGRGRRSPSGSVSGSSSRSSSPSSSRSSGSHTRSRSRSPSRSRSFSSSSSPSRSSRSRSPPPQRRRSPAEAAAAAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNESHLKEIFSNFGEVVSVELAIDRAVNLPKGYAYVQFKTREDAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASVAAPKRDTPRTDNASADVDKDGPKRQRESPRRKPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRIRSPARVSPRRMRGSPGRRRSPPPPPPPRRRSPPPRRARSPPRRSPIGHRRTRSPLRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPARKP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01489 420 Gene3D - 6 190 IPR012677 -
Vian11g01489 420 SMART rrm1_1 107 180 IPR000504 GO:0003723
Vian11g01489 420 MobiDBLite consensus disorder prediction 326 371 - -
Vian11g01489 420 MobiDBLite consensus disorder prediction 227 242 - -
Vian11g01489 420 SUPERFAMILY RNA-binding domain, RBD 93 189 IPR035979 GO:0003676
Vian11g01489 420 MobiDBLite consensus disorder prediction 11 65 - -
Vian11g01489 420 SMART rrm2_1 107 180 IPR003954 GO:0003676
Vian11g01489 420 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 3 264 - -
Vian11g01489 420 CDD RRM_RNPS1 108 180 IPR034201 -
Vian11g01489 420 MobiDBLite consensus disorder prediction 246 276 - -
Vian11g01489 420 MobiDBLite consensus disorder prediction 183 420 - -
Vian11g01489 420 MobiDBLite consensus disorder prediction 206 226 - -
Vian11g01489 420 FunFam Serine/arginine-rich splicing factor SR45 3 191 - -
Vian11g01489 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Vian11g01489 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Vian11g01489 420 MobiDBLite consensus disorder prediction 400 420 - -
Vian11g01489 420 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01489 Vian-Chr11 24916676 24921262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01489 108 181 Eukaryotic Initiation Factors Gene Family AT2G23350 35.135 3.14e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01489 K14325 - gmx:100783566 248.825