Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01476 ATGGGTGTGAACGAAAATTTCAACAAGGATGATGATCATCATGAGTGTGTGGATGACGATGAAGTCCCACTTCCTGGATTTCGATTTCATCCCACAGATGAAGAGCTTGTTAGTTTCTATCTACGAAGGAAGCTTGACAAGAAACCCATCAGCATCGAGCTCATCAAACAGATTGATATTTATAAATACGATCCTTGGGATCTTCCAAAGAGCAATGGCAGTGGAGGAGAGAAGGAGGGGTACTTCTTCTGCAGAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAATAGAGTGACTGGGTCTGGGTTCTGGAAAGCAACCGGCATAGACAAACCAGTGTACTCACAAGGTGGAGAAGGCAATGACTGCATTGGACTCAAAAAAACATTAGTCTATTACCGTGGCAGTGCAGGCAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGACTTCCTTCTAACACAGACACCAACACAAGCCTTCCAAACTCCAGGAATTATGTCGATGTTCCCCAAGAAGCTGAAATTTGGACGTTGTGTAGAATTTTCAAGAGAAACGTGTCACAGAGGAAGCACGTGGCGGACTTGAAACAAGTATCTGCCAAGCGCCATGCATTTTATGACAAGAGCTCGAGAGCGAGCAATATGGAGTCTGACAGTGGTAACCAAGAATCGTATATAAACTTTGGTGGGTACTATCACAACGAGCAGAAACCCGTCATCAACTATACAAACTGTGATAAAAGGAATCAGTTTAGTGTGGTGAGTCAGTTGTGTTCTACAGTGGCACAGCAGCAACCTCAACTAACTGCACCATCTTCTAACCTTTGGAGTAACCCACCTGGGAACGATTTCTTCACATTCGATAACTGGGATGAACTTGGATCCGTAGTGAAGTTTGCTGTTGATTCGCCTAGCTTGTAG 930 0.4441 MGVNENFNKDDDHHECVDDDEVPLPGFRFHPTDEELVSFYLRRKLDKKPISIELIKQIDIYKYDPWDLPKSNGSGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSQGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTSLPNSRNYVDVPQEAEIWTLCRIFKRNVSQRKHVADLKQVSAKRHAFYDKSSRASNMESDSGNQESYINFGGYYHNEQKPVINYTNCDKRNQFSVVSQLCSTVAQQQPQLTAPSSNLWSNPPGNDFFTFDNWDELGSVVKFAVDSPSL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01476 309 Pfam No apical meristem (NAM) protein 25 153 IPR003441 GO:0003677|GO:0006355
Vian11g01476 309 Gene3D NAC domain 32 191 IPR036093 GO:0003677|GO:0006355
Vian11g01476 309 ProSiteProfiles NAC domain profile. 23 187 IPR003441 GO:0003677|GO:0006355
Vian11g01476 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 243 - -
Vian11g01476 309 FunFam NAC domain-containing protein 35 32 190 - -
Vian11g01476 309 SUPERFAMILY NAC domain 23 187 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01476 Vian-Chr11 24778995 24780474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01476 10 187 NAC Transcription Factor Family AT5G39820 58.947 3.52e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian11g01476 NAM 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01476 - - gmx:100790471 539.65