Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01475 ATGATAAAGAGAGTTGGACTTAGAATGTCCTGTGAGTGTGGCAATACTATACAACAAAAAAACCCTTTTCTATGGATGAGAGTTAAGATGTGTTTGGTCTCATTAAAAGATTTCAAAAAAGTCTCACATTTTGTACCTGTTGTTTCCATAAGACTTTTTATACTTGTTAACCATTTTGATTATTTGGAAGCCTCTTTCCTCGACTTCACTCTCATTGTCTTCTCTCGAAGTCTCTCTCAAACCCTCGTCCTTGTTCTTTGCTTCTTCCCCCTTTCTCCAACTGTCAAATGGTTCAATGGCAGAGTTCGTCGTTCAGTTGACGAAGTTCATTTTCGGTGTTGGTCCTTAGTGAAGGAACCAGAGGTGAGTGACTTCCTTTGCCATTCAAGTTTCTTTGATGTAGAAAAATGTAAACGTGTTGCACGCCCAACACTTTCCTTTGTCCTAGACAAAGTATTGAATTTGGATGTGAGTGAGAGTGGATTTGGAAGTAAAGGAACACTTTTCTCAGTGTATGCTGTTTTGAGTCTATTCATCTTCTCTGCGTCAGACTTTTCCACCAACACAACATATCTTAGGAGTTTATGGAAAAAAGGTGTCATGGACATAAGGATGAAGAAATATCTCCTAGATCCTGTTGAGGAGGAAAAACTAAGGAATAAATGTTGGTTACAGGCAGTGGGTGGAAGTGAGTCACGACTAATAGTGAAATGTAACATACAAGCCACGTTGTTGGTATTGCCCTTGATTGGAATTTGGGCTCTGGTGGGGAACAAACAGGGAACAATGAGTTCCCTCGCTTCTCCAGTGAGTTTGGGGAGCCTCATGAGTAAAGAGATGGCATTGTTTATCATTGTCTGTGTTAGTAGTAGTAGTAAGGGTGGAGATGATGGTGCTGAGAAGGCGGAAAAGCTGGGGAATTCCAAGCATCTCAGAATGCCAAAGCCTAATTATAACAAGATTGAAGAGGAGAAGTCTCAAACTAGAGGAGGGGAGAAGGTGGCATCAGAGCTTGATGTCTCTATTCCTGGTGCCGCAACAGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCACGACTCCAGGCTGCTAGGGATGCAGCTCCTGTCAAAGTAGAAATTCTGGAGGTTGGTGACAGTGGTATGCTGGTGGAGGAGTTGGCCTATTGTTTGGCAACCAGTGAAGGTGAAATCCTTGGTTATCTATACTCCAAGGGGATTAAACCAGATGGGGTACAAACACTTGACAACGATATGGTAAAGATGGTTTGTAAAGAGTATGATGTTGAAGTCATAGATGCAGACCCGGTCAAAGTTGAAGGCTTAGTGAAGAAAAGAGAAATTCTTGATGAAGATGACCTCGATAAACTCAAAGATAGGCCTCCTGTAATCACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCCGCTTCTGAAGCTGGTGGGATCACACAAGGAATTGGGGCCTATAAAGTGGAAGTACCTGTTGATGGCAAAAAGTTACCCTGTGTTTTCCTTGACACTCCTGGACACGAGGCATTTGGAGCTATGAGAGCTCGTGGAGCAAGTGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGGATTCGTCCTCAAACAAATGAAGCTATTGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCAATAAACAAGGCATATAAAGATGGAGCAAATCCAGAACGAGTGATGCAGGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTAGTACCCCGATGGTTCCGATAAGTGCTCTTAAAGGGCAGAATCTAGACGATCTCCTGGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCGGATAGAAGTGCAAAGGGAACAGTCATCGAAGCAGGACTAGATAAATCAAAGGGACCATTTGCTACATTTATTGTGCAGAATGGCTCTCTTAGACGGGGTGATATAGTAGTTTGCGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGTGTTGATGAAGCTACACCTTCTGTACCTGTACAGGTTATTGGATTGAATAATGTTCCTATTGCTGGTGATGAATTCGAGGTTGTTGAATCCCTTGATGCTGCACGTGAAAGGGCTGAGGCTCGTGCGGAGTCATTGCGAAACGAGCGCATTTCAGCAAAGGCAGGAGATGGCAAAGTCACCCTTTCTTCCTTAGCTTCAGCAGTTTCCTCAGGAAAGCTGTCTGGACTTGACTTGCATCAATTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTAAGAAAAGCTCTGCAGGTGCTGCCACAAGACAATGTTACATTGAAGTTTTTGTTGGAAGCAACAGGTGATGTAAGCACTAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTGTGGGATTTAATGTGAAAGCATCAGGCTCTGTGAAAAGCTATGCAGATAACAAAGCAGTTGAGATTAGATTATACAGAGTTATTTATGAATTAATTGATGACGTACGAAATGCAATGGAAGGGCTTCTAGAACCAGTTGAGGAACAAGTAACAATTGGTTCAGCAGTAGTACGAGCTGTATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAGGGAAAGGTGCTAAAAGATTGTGGTATTCGAGTCAAGCGGAAGGGAAAAATAGTTCATGTTGGTATTATTGATTCTTTGAGACGAGTGAAGGAAATTGTTAAGGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTGGAAGACTTTGATGACTGGGAAGACGGTGACATTCTTGAAGCCTTCAACACAGTTGAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTGCACGGTAG 2976 0.4311 MIKRVGLRMSCECGNTIQQKNPFLWMRVKMCLVSLKDFKKVSHFVPVVSIRLFILVNHFDYLEASFLDFTLIVFSRSLSQTLVLVLCFFPLSPTVKWFNGRVRRSVDEVHFRCWSLVKEPEVSDFLCHSSFFDVEKCKRVARPTLSFVLDKVLNLDVSESGFGSKGTLFSVYAVLSLFIFSASDFSTNTTYLRSLWKKGVMDIRMKKYLLDPVEEEKLRNKCWLQAVGGSESRLIVKCNIQATLLVLPLIGIWALVGNKQGTMSSLASPVSLGSLMSKEMALFIIVCVSSSSKGGDDGAEKAEKLGNSKHLRMPKPNYNKIEEEKSQTRGGEKVASELDVSIPGAATARKGRKWSKASRKAARLQAARDAAPVKVEILEVGDSGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTLDNDMVKMVCKEYDVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKKLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKAYKDGANPERVMQELSSIGLMPEDWGGSTPMVPISALKGQNLDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGSLRRGDIVVCGEAFGKVRALFDDGGKRVDEATPSVPVQVIGLNNVPIAGDEFEVVESLDAARERAEARAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALQVLPQDNVTLKFLLEATGDVSTSDVDLAVASKAIIVGFNVKASGSVKSYADNKAVEIRLYRVIYELIDDVRNAMEGLLEPVEEQVTIGSAVVRAVFSSGSGRVAGCMVTEGKVLKDCGIRVKRKGKIVHVGIIDSLRRVKEIVKEVNAGLECGLGLEDFDDWEDGDILEAFNTVEKKRTLEEASASMAAAVEGVGVAR 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01475 991 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 462 635 IPR000795 GO:0003924|GO:0005525
Vian11g01475 991 FunFam Translation initiation factor IF-2 770 875 - -
Vian11g01475 991 Gene3D Translation factors 876 972 - -
Vian11g01475 991 FunFam Translation initiation factor IF-2 638 756 - -
Vian11g01475 991 Pfam Translation-initiation factor 2 770 863 IPR023115 -
Vian11g01475 991 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 769 881 IPR036925 -
Vian11g01475 991 Pfam Elongation factor Tu GTP binding domain 467 627 IPR000795 GO:0003924|GO:0005525
Vian11g01475 991 CDD mtIF2_IVc 881 963 - -
Vian11g01475 991 SUPERFAMILY Translation proteins 877 971 IPR009000 -
Vian11g01475 991 FunFam Translation initiation factor IF-2 459 637 - -
Vian11g01475 991 Gene3D - 459 637 IPR027417 -
Vian11g01475 991 FunFam Translation initiation factor IF-2 875 972 - -
Vian11g01475 991 CDD IF2_mtIF2_II 642 723 IPR044145 -
Vian11g01475 991 NCBIfam translation initiation factor IF-2 385 973 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vian11g01475 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 638 IPR027417 -
Vian11g01475 991 ProSitePatterns Initiation factor 2 signature. 924 946 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vian11g01475 991 PRINTS GTP-binding elongation factor signature 534 545 IPR000795 GO:0003924|GO:0005525
Vian11g01475 991 PRINTS GTP-binding elongation factor signature 466 479 IPR000795 GO:0003924|GO:0005525
Vian11g01475 991 PRINTS GTP-binding elongation factor signature 570 579 IPR000795 GO:0003924|GO:0005525
Vian11g01475 991 PRINTS GTP-binding elongation factor signature 518 528 IPR000795 GO:0003924|GO:0005525
Vian11g01475 991 MobiDBLite consensus disorder prediction 296 332 - -
Vian11g01475 991 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 315 979 IPR015760 -
Vian11g01475 991 MobiDBLite consensus disorder prediction 291 336 - -
Vian11g01475 991 Hamap Translation initiation factor IF-2 [infB]. 20 971 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vian11g01475 991 SUPERFAMILY Translation proteins 638 722 IPR009000 -
Vian11g01475 991 Gene3D Translation factors 638 754 - -
Vian11g01475 991 Coils Coil 721 748 - -
Vian11g01475 991 CDD IF2_eIF5B 465 631 - -
Vian11g01475 991 NCBIfam small GTP-binding protein domain 464 625 IPR005225 GO:0005525
Vian11g01475 991 Gene3D - 770 875 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01475 Vian-Chr11 24745215 24766564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01475 441 861 Eukaryotic Initiation Factors Gene Family AT1G76810 29.918 1.55e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01475 K02519 - gmx:100778924 1131.7