LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian11g01448	ATGAGGTTTTCGGGTTACATAGCTCAATGGAGAAGCGCAGCGAAGGAAGCGATGGACCGCACAGGCATCACTGTGAATTTCCTGTGTTGGCTTCACTTCACCAGCAACTACCTCTGTTCCCCGGCGTATGGGGTTAGCATGCTCCCCACTCTCAACGTCACCGGCGACATCCTCCTCGCCGACCACCTCTCCCCGCTGCTCGGGAACGTCGGCCACGGCGACTTGGTTCTCGTTCGGTCCCCTCTCAACCCTAAAATCAGGTTGACGAAGCGCGTCGTGGCCGTGGAAGGGGACACCGTCACTTACTTCGACCCGTTGCACTCTGAAGCTTCTCAAGTTGCAGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATTTACGCCTCCCGTGACTCACGCCATTTCGGTCCTGTCCCATATGGTCTCATTGAAGGAAAAGTGTTTTTCCGGAGTGAGGTAGAGTTGTATTGA	477	0.5493	MRFSGYIAQWRSAAKEAMDRTGITVNFLCWLHFTSNYLCSPAYGVSMLPTLNVTGDILLADHLSPLLGNVGHGDLVLVRSPLNPKIRLTKRVVAVEGDTVTYFDPLHSEASQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRSEVELY	158

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian11g01448	158	FunFam	Inner membrane protease subunit 1	35	157	-	-
	Vian11g01448	158	Gene3D	Umud Fragment, subunit A	41	155	-	-
	Vian11g01448	158	CDD	S26_SPase_I	44	149	IPR019533	GO:0004252\|GO:0006465
	Vian11g01448	158	SUPERFAMILY	LexA/Signal peptidase	44	152	IPR036286	-
	Vian11g01448	158	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	9	152	-	-
	Vian11g01448	158	Pfam	Signal peptidase, peptidase S26	34	103	IPR019533	GO:0004252\|GO:0006465
	Vian11g01448	158	Pfam	Signal peptidase, peptidase S26	111	152	IPR019533	GO:0004252\|GO:0006465
	Vian11g01448	158	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	88	100	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vian11g01448	158	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	116	135	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian11g01448	Vian-Chr11	24377768	24381600	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian11g01448	47	152	MADS-box Gene Family	AT1G29960	49.533	2.85e-32	110

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian11g01448	K09647		-	cave:132173278	229.95

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