Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01399 ATGCAGAAACATCAATACAATTCCATGGAATCTAGAACTGAGGAATTCCATTCTGCACCGCAATTGGTCCCTCAAGACCATCGTGATGGCATGCATATCAATGCACGGCCTCCAGCATATAATCTGTCAGAAAATAAACCTGTGCTTAACTATTCCATACAGACAGGTGAGGAATTTGCTCTGGAGTTTATGAGAGATAGGGTGAATCTCAGGAAGCCTCCATTTCCAAATGTTGTGGGTGATCCCAACTATTCAACAGGCTATATGGAATTGAAAGGCATTTTGGGACATTCAGGATCTGAGAGTGGATCTGATATATCTGTGCTCACGAAGACTGAGAAGGGTCCTAAAGAGTTTGACAGAAGGAACTCTTCTCAACACCAGGACAGAAGTAATTATGGTTCAGCTCGATCAATTCCTAGAACTTCATCCAATCAAGAAAGTTACCGAGTCCTTCATGGTACTGCCCCTTCCAGTGCATCTGAAATTTCATCCATGAAGATGAAGGTTCTATGCAGCTTTGGGGGAAGAATATTGCCAAGGCCTAGTGATGGAAAGCTTAGATATGTTGGGGGTGAAACGCGTATTATAAGTATAAGAAGGGACATACGTTTGCCGGAGCTTATGCAGAAAACATCATTAATTTATAGTGAACCTCATGTGATAAAGTATCAGCTCCCTGGAGAAGATCTTGATGCTTTAGTTTCGGTATCTTCTGATGAGGATCTGCGGAATATGATGGAGGAATGTCATGATTTACAAGGTGAACGAGGATCAACCAAGCTTAGGATGTTTCTGTTCTCTATAAATGATTTGGATGATACTCAGTTTGCCATAGGTAGCATTGACGGTGATTCTGAAATCCAGTATGTAGTTGCTGTTAATGGCATGAGCATGGGTTCAAGAAACAACTCAATTCTTCATGCCGCAGGTGGCTCTACCAATAACTTGCATGAATTGAGTGAACAAAATAATGAGAGGGAGACCAACAGAGTTTTGATGGACTCATTTGGTGTTAGTGGCTCATCTTTGACTGACAATGTTAAATCATCATTGACTATTCAATCTTCACAACAAATGCTTCCAATCTCCTCTAGTGCTTTCGAAACCCATCCATTGTTTTATGATGAACCGGTTATTCACCAAAGGGAAGGTAGTCAATATCCACTACAGCACGGTCTTGGTCCTTCTAACAACTCCGCTCGCAATCTTGGAGAGATTCCTGTTTCTGTGCCTATTCAAAGTCTTGTTAACCAAGGGATCATGAATGATGGACAAACATCCAGTGAGTTGCAGGTACAAGTTTCAGCTATGCCAGACATGTTGGTAAAAAGAAAGGGTGATAATTTCATTCATACAGGCAACGATCCAGGAAAAGTTTTCCCCTTGGAAGCACCATATCCTATTGCTTCGCTGCCATTTGAGGGAAATTTGCATGCTAATTTACCAGAGGCACAAGTTACTGCTGCTCTATCAGAAGGGCTTCATCCTGCAGTACCATCAAAGAACAAGGGTAAGCACCAGCAGTCTGAAGATGCCTATTCATTAATCGGGAGTATGAATCGCACACAGACTCCTAAGTCTGGTGAAGATGATTTCTATACTACACCCACTGATGCATTCAGCCGTGCTCAGGTTGATGCTGAGTCCAATGTGATTGATTTCGGTAGCCTTGAACCACCTCCACTTCCCAACAGAGTCTATTATTCAGAGAGAATTCCAAGGGAGCAGGAAGATTTGCTGAATCGATCTACTAAGTCAGATGATGCGTATGGTTCTCACTTACTCATGTCCGATTTGCTTTCTGACTTCAGCCAGAAGAATTCAGAAACAGAATCCAGTGACATATTGCACGGTGGGAATATGTCAAATCAGAACATTATGTCCAGATCGACACCAAAGCCTTTGCAAGCAGATGGCAATACCATTGATGATGGATTTGCCCCACCGCCAACATACAAACAGTGGCCGGATGCAACAAATAAGTTGAATTCAAAGTTATCGCTGCATGTGAATTCTGAGTTGAAGCAAGTGTTAGTAGATAATAAGGTTACTGGAATTGAGGACCAGGTCCTTCATTCTGAAAATGATGCCAATCGTTCCAAAGACAACCATAACATCCTCTTAGTTGATGGACCCAAAGGTACTGGACATCTGGCATTTCATCAGGTTCTTCCAGTTGAACATAATTTGAATGTAGTATCTAAACCTCCAGACCTCAATTTGGTTGAAGTTTCTACCAGGGAATTGGATAACGGTACTAAGGTCCAAGCTGTGTCTTTTCCTTCAACTGGAAACACAGGCCAAGATGTTTCTCAAAATTTCCCCCCAGAAGTTAAACCAAGACCTACTGCTCAGGGAGACATTCTTATTGATATTGAGGACAGGTTTCCCCGTGATATCCTTCATGATATGTTCTCCAAAGCAATACTTTCCGAAGATTCATCAAGTATTGGTCCGTTACCAGCAGATAGAGCAGGTTTGAGCTTACACATGGACAATCATGAGCCTAAACGTTGGTCATATTTTCAGAACTTGGCCCAAGAGGGGTTTGATAATGTTTCTCTAATTGATCAGGACTATCTTGATTTTTCGTCTGCAGTGAGTAAAGTTCCAGATGGGGATAGTAAATCTCAGCAGTCTGCTGCTCTACTGGCAGATGGTGCTTTGGCAGGACACAAGGAATCTCACCTAAATTTCGCTGGTGACGAAAATCAGAAAAATGTACCTGTAACAACTAAAATAGAATCAACTCCCCTTCAACAAAAATATGAGCCTTCCCAGATAAAGGGCAATGAAAATAAGAACATGGACGCCATAATGGAAAACATAAGACCACAGGAATCTGAATACCTGGAGGATGACCTGAATGAAGCAAGGAATGTGGATTTGGCAGGGAGTTTTGACATCAGTACTGTGCAGTTCATAAAGAATGATGATCTTGAGGAGCTGCGAGAGCTGGGTTCTGGTACCTTTGGGACTGTGTACCATGGAAAGTGGAGGGGATCGGATGTTGCTATTAAAAGAATAAAGAAAAGCTGCTTCGCTGGTAGATCTTCAGAACAAGAGAGACTGACCATAGAGTTCTGGCGTGAAGCTGATATACTTTCCAAGCTTCACCATCCAAATGTTGTGGCATTTTATGGTGTAGTCCAGGATGGACCAGGAGCAACATTAGCCACTGTCACTGAGTACATGGTGGATGGATCTCTCAGGAATGTTTTACTTCGTAAGGATAGATATCTTGACCGCCGTAAGAGGTTGATAATAGCCATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTGCATTTTGACTTGAAATGTGACAATTTGCTTGTGAACTTGAAGGATCCTTTACGGCCAATATGCAAGGTTGGCGATTTTGGCCTATCAAAAATTAAGCGAAACACCCTTGTTTCTGGTGGTGTTCGTGGAACTCTACCTTGGATGGCACCAGAGCTGCTAAACGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTGTTCTCTTTCGGCATAGTCTTATGGGAGATTCTTACTGGTGAAGAGCCATATGCTAATATGCACTATGGTGCAATTATTGGAGGTATTGTGAATAACACATTGAGACCTACAATTCCCAGTTATTGTGATCTTGAGTGGAAAACACTGATGGAACAGTGTTGGGCACCCAATCCTGCAGTTAGGCCATCCTTCACAGAAATTGCTCGCCGTCTGCGTGTGATGTCTGCAGCTGCTATTCAGAACAAGGGACAGGTCCACAAGGCTTCTAAATGA 3792 0.4235 MQKHQYNSMESRTEEFHSAPQLVPQDHRDGMHINARPPAYNLSENKPVLNYSIQTGEEFALEFMRDRVNLRKPPFPNVVGDPNYSTGYMELKGILGHSGSESGSDISVLTKTEKGPKEFDRRNSSQHQDRSNYGSARSIPRTSSNQESYRVLHGTAPSSASEISSMKMKVLCSFGGRILPRPSDGKLRYVGGETRIISIRRDIRLPELMQKTSLIYSEPHVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQGERGSTKLRMFLFSINDLDDTQFAIGSIDGDSEIQYVVAVNGMSMGSRNNSILHAAGGSTNNLHELSEQNNERETNRVLMDSFGVSGSSLTDNVKSSLTIQSSQQMLPISSSAFETHPLFYDEPVIHQREGSQYPLQHGLGPSNNSARNLGEIPVSVPIQSLVNQGIMNDGQTSSELQVQVSAMPDMLVKRKGDNFIHTGNDPGKVFPLEAPYPIASLPFEGNLHANLPEAQVTAALSEGLHPAVPSKNKGKHQQSEDAYSLIGSMNRTQTPKSGEDDFYTTPTDAFSRAQVDAESNVIDFGSLEPPPLPNRVYYSERIPREQEDLLNRSTKSDDAYGSHLLMSDLLSDFSQKNSETESSDILHGGNMSNQNIMSRSTPKPLQADGNTIDDGFAPPPTYKQWPDATNKLNSKLSLHVNSELKQVLVDNKVTGIEDQVLHSENDANRSKDNHNILLVDGPKGTGHLAFHQVLPVEHNLNVVSKPPDLNLVEVSTRELDNGTKVQAVSFPSTGNTGQDVSQNFPPEVKPRPTAQGDILIDIEDRFPRDILHDMFSKAILSEDSSSIGPLPADRAGLSLHMDNHEPKRWSYFQNLAQEGFDNVSLIDQDYLDFSSAVSKVPDGDSKSQQSAALLADGALAGHKESHLNFAGDENQKNVPVTTKIESTPLQQKYEPSQIKGNENKNMDAIMENIRPQESEYLEDDLNEARNVDLAGSFDISTVQFIKNDDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEYMVDGSLRNVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWKTLMEQCWAPNPAVRPSFTEIARRLRVMSAAAIQNKGQVHKASK 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01399 1263 MobiDBLite consensus disorder prediction 128 158 - -
Vian11g01399 1263 MobiDBLite consensus disorder prediction 1 15 - -
Vian11g01399 1263 SUPERFAMILY Protein kinase-like (PK-like) 972 1243 IPR011009 -
Vian11g01399 1263 Gene3D Transferase(Phosphotransferase) domain 1 1068 1263 - -
Vian11g01399 1263 Pfam PB1 domain 184 267 IPR000270 GO:0005515
Vian11g01399 1263 CDD PB1_UP2 171 267 - -
Vian11g01399 1263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1106 1118 IPR008271 GO:0004672|GO:0006468
Vian11g01399 1263 MobiDBLite consensus disorder prediction 1 41 - -
Vian11g01399 1263 SMART serkin_6 981 1247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01399 1263 PRINTS Tyrosine kinase catalytic domain signature 1215 1237 IPR001245 GO:0004672|GO:0006468
Vian11g01399 1263 PRINTS Tyrosine kinase catalytic domain signature 1100 1118 IPR001245 GO:0004672|GO:0006468
Vian11g01399 1263 PRINTS Tyrosine kinase catalytic domain signature 1063 1076 IPR001245 GO:0004672|GO:0006468
Vian11g01399 1263 PRINTS Tyrosine kinase catalytic domain signature 1171 1193 IPR001245 GO:0004672|GO:0006468
Vian11g01399 1263 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 187 269 - -
Vian11g01399 1263 Gene3D - 186 269 - -
Vian11g01399 1263 PANTHER SERINE-THREONINE PROTEIN KINASE 212 1245 - -
Vian11g01399 1263 MobiDBLite consensus disorder prediction 112 127 - -
Vian11g01399 1263 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 974 1068 - -
Vian11g01399 1263 Gene3D Phosphorylase Kinase; domain 1 968 1067 - -
Vian11g01399 1263 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1069 1261 - -
Vian11g01399 1263 Pfam Protein tyrosine and serine/threonine kinase 982 1244 IPR001245 GO:0004672|GO:0006468
Vian11g01399 1263 MobiDBLite consensus disorder prediction 611 632 - -
Vian11g01399 1263 SUPERFAMILY CAD & PB1 domains 183 274 - -
Vian11g01399 1263 SMART PB1_new 182 269 IPR000270 GO:0005515
Vian11g01399 1263 MobiDBLite consensus disorder prediction 760 784 - -
Vian11g01399 1263 MobiDBLite consensus disorder prediction 760 774 - -
Vian11g01399 1263 MobiDBLite consensus disorder prediction 112 158 - -
Vian11g01399 1263 ProSitePatterns Protein kinases ATP-binding region signature. 987 1012 IPR017441 GO:0005524
Vian11g01399 1263 CDD STKc_MAP3K-like 987 1244 - -
Vian11g01399 1263 ProSiteProfiles Protein kinase domain profile. 981 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01399 Vian-Chr11 23445620 23451335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01399 18 618 MAP Kinase Kinase Kinase AT1G16270 38.037 2.34e-94 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vian11g01399 PK_Tyr_Ser-Thr 5.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01399 - - var:108333936 2511.1