Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01398 ATGCAAATTTTGGTGTTTACTGTGATCCCTTCTTGGCCCGTAGCTGCATCTTTTGAGCTGAGAGCAATGGATTCTCTTTGTTTGCAGAACCCTAGATTGGTTAACTTGGGTTTGGGGATTGAGATGGAGTTGAAGGGTTCTGACTGTGTTCCGTTGTTGTCTAAGGAAAAAAATGGCGTGACTGAACAATTAAGATTTGATAATACGTACAGTAACATGGAATCTAGAGTTGATGAATGGCACCAGTCTCGATCACAGCCAGTGGTGCAGGACCATTTGGATGGCACACATACCCATAGAAGACTAGTTGACTTTAATACATCAGAAGTTAAACCTGTACTTAATTACTCTATACAGACAGGTGAAGAATTTGCTCTTGAGTTTATGAGAGATAAGGTGAATATGAGTAAGCCTGTATTATCAAATGTTAGTGATTCGAATTATACCCCAGGTTATATGGAACTAAAAGGCATTTTAGGTATCAACCATGCAGGATCTGAAAGTGGATCTGATATCTCTATGTTCTCAATGGCTGAGAAATATCCAAAAGAATTTGATACAACGAGTACATCTTTACCTGGAGACAGAATCAACTATGGGTCTATTCAATCAATGCCAAGAACTTCATTGAATCAGGATAATAGACAATTTGTGCCTGGGTATGGCTCTTTTGGAGCTTATGATAGATCAATGATCATTAAGTTTCTTTGCAGCTTTGGCGGTAAAATATTGCCACGACCATGCGATGGAAATCTAAGGTATGTTGGAGGCCAAACACGTATTCTTCGACTAAGAAAGGACATATCTTGGCTGGAGCTCATGCAGACAGCATTTCAAATCTATAGTCAGGTTTATGCAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTGTCATCTGATGAGGATTTGCAGAATATGATGGAGGAATGTAATCATCTACAAGATAGGGAAGGATCACAAAAACCTAGGATGTTTTTGTTCTCAATGAGTGATTTGGAGGATGCTCAATTTGGTCTCAGCAGTATGGGTGATGATTCTGAGATTCAGTTTGTTGTTGCCGTTAATGGCATGGACTTGGGATCAAGAAAAAACACTACAATGATTGGTGTCAGCGTTTCTGCAAATGACATAAATGAATTGAACAGGCAAAGTATTGACAGGGAGACTAATAATAGAGTTGGTATAGAATGTATTGTACAAGGAAATCCTCCCCCAACTAACAATTTTGACTCATCATTGGCTTCTCAATTTTCACCATCAGTGCTACCAACTTCCTCAAATTCATATGAAAAGTATCCACTGTTTTATAGTGATCAAATGATGTGCCATGGCAAACTTAGTGATCAATACTTTATTAATGAAGGCCTTGATCTTTGTCATAAACCTGTTATTGGAGAGACCCCGATGATTATGCCTCCCCATATGCTTGTCAATCAACAAGGGATTTTAAATGAAGGCCTTCCTCCTCGAGGAATACAAGTACAAAATTCAGAAATACCAACAACATTGGCAAACAAGATGGTTACTAGTTCAATTCCACAAGTAAGTGACCCTGGGAAAGTTTTGGCATCAGAATTACCATCACCCGCTCCTGCTCAACTGCTTAATGGTTACATGAAAAATAATTTTCCTGAAGCATCTGTTGTAGTTACTGTGTCAGAGGGGTTTCCATTGCATCCACCAAGCGTGAACAAGGGCCAAGATTATGAAGAGACTTCTTCCACAAGCAGTGCATTTGGTCCTACTTATGTTGATTCCCACTCCAATGCTTCTGACTTGAGTTCCCTTCATCCTCCTCCTCTTCCTAAGAGAGTTTACTATTCAGAGAGAATTCCACGCGAACAAGTAGAGTTGCTGAACCGGTCCTCAAAATCTGATGATACACACAGCTCTCAGTTTCATGTTCCAGATTTACTCTCTGATATCAACCCACCACATTCAGTTACAGAATCTGTTGACAAGTTGCATGATGGAAATCTGTCTGATCTAAATGAGGAATTAAGCATCATAGGAAATCCGTTGCATGCAAATGTATTTGCAGTTGAAAATGGGATTGTCAATAATCAAATCTACAAACAGCCGCCTGATGCAAACACTCAGATAAAATCAAAGCTAACTGAGCATGTGAATCCTGAGCTGAGGCAGGTATTATTGGACAATGAAGGACACACAGATGTGTTAAATAAAGATAATGTTGTTGAGTTGGAAATGAAAATTAATGGTAACAATAGCTATAACAAACCCCTGATTGATGAGACAAAAGCCAGTAAACCTGACTTGCAGAATTTGCACCAGGTTTCTTCTGGTAAGATTCTTAATGATCCTGCATCCACTCTTCCAGAGGTTGACTGGGGTGATACCTCTGTGAAAGAGTCTAATGACAATGTTAATGTGCAAGCCTTACCTGTATCTCTAAATGGGAATATTGATGATGATTCTGAAGAATTTCCTTCTGATGTCATTATGAACCAAGCACATGGTGACATCCTTATTGATATTAATGATCGGTTTCCCCGTGAATTTTTCACTGATATATTCTCTAAAGCAGTACTTGAAGAAGACCCCTCTAGTTTCCATCAATTAACTTCAAATGGAGTGGGCTTAAGCGTAAACATGGAAAATTGTGATCCTAAACGATGGTCGTATTTTCAAAAATTGGCTCAAGCAGGCACTGATAATGTGTCTCTTATTGACCAAGATCATCTTGGGTTTGCACCTGCAATAGGAAAAGTGGTTGGAGATGATAGAGCTCAACATGTTACACCTTTAACAACTGATGAAGTTTCTCTGAACCATGCAGAGTCCCACCTCGATTTTGTTGAAGAAAATTTGCTTGGAAGAACTGGAGGAGAAAGAAAGTCTAACTATGATCATTCCCAAGTGAATGATATTGAAAGCATGCAATTTGATGCCATGATGGAAAACATAAGAGCTCAAGAGTCAGAATGCGAGGTTGGGATGTTTGAAAAAAGGAATAACAATCTACATCCTCCTGATCCTTCTTTGGAAGAGATTGATACGAGTTCTTTGCAGGTCATAATGAATGATGATCTTGAAGAGCTGAAGGAACTGGGTTCAGGTACCTTTGGCACCGTGTATCATGGAAAATGGCGAGGAACAGATGTTGCCATCAAAAGAATAAAAAAAATCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTAGAATTCTGGCGGGAAGCTGATATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCATTTTATGGTGTAGTGGAGGATGGACCCGGAGGAACAATGGCTACTGTTACAGAGTACATGGTGGATGGTTCTCTTAGGCATGTGTTACTTCGCAAGGATAGGTATCTTGATTTTCGTAAGAGACTGATAATTGCGATGGACGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTACACTTTGACCTAAAATGTGACAATTTGCTGGTGAACTTGAAAGATCCTATGCGGCCTATTTGCAAGGTTGGGGATTTTGGATTATCAAAAATTAAAAGAAATACCTTGGTTTCTGGTGGTGTGAGGGGGACTCTTCCTTGGATGGCGCCAGAGCTTCTGAATGGTAGCAGCAACAAGGTTGATGTTTTCTCCTTTGGCATAGTATTATGGGAGATTCTAACCGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGGATTGTGAATAACACATTAAGACCAACAATACCAAATCATTGTGATTCTGAATGGAGAACACTGATGGAGCAGTGTTGGGCACCCAATCCTGCGGCTAGGCCCTCCTTCACAGAAATAGCTCGTCGATTGCGCATAATGTCTGCAGCTGCTAAATCATCGGGCCAAAAAGCATCTAGATGA 3897 0.4003 MQILVFTVIPSWPVAASFELRAMDSLCLQNPRLVNLGLGIEMELKGSDCVPLLSKEKNGVTEQLRFDNTYSNMESRVDEWHQSRSQPVVQDHLDGTHTHRRLVDFNTSEVKPVLNYSIQTGEEFALEFMRDKVNMSKPVLSNVSDSNYTPGYMELKGILGINHAGSESGSDISMFSMAEKYPKEFDTTSTSLPGDRINYGSIQSMPRTSLNQDNRQFVPGYGSFGAYDRSMIIKFLCSFGGKILPRPCDGNLRYVGGQTRILRLRKDISWLELMQTAFQIYSQVYAIKYQLPGEDLDALVSVSSDEDLQNMMEECNHLQDREGSQKPRMFLFSMSDLEDAQFGLSSMGDDSEIQFVVAVNGMDLGSRKNTTMIGVSVSANDINELNRQSIDRETNNRVGIECIVQGNPPPTNNFDSSLASQFSPSVLPTSSNSYEKYPLFYSDQMMCHGKLSDQYFINEGLDLCHKPVIGETPMIMPPHMLVNQQGILNEGLPPRGIQVQNSEIPTTLANKMVTSSIPQVSDPGKVLASELPSPAPAQLLNGYMKNNFPEASVVVTVSEGFPLHPPSVNKGQDYEETSSTSSAFGPTYVDSHSNASDLSSLHPPPLPKRVYYSERIPREQVELLNRSSKSDDTHSSQFHVPDLLSDINPPHSVTESVDKLHDGNLSDLNEELSIIGNPLHANVFAVENGIVNNQIYKQPPDANTQIKSKLTEHVNPELRQVLLDNEGHTDVLNKDNVVELEMKINGNNSYNKPLIDETKASKPDLQNLHQVSSGKILNDPASTLPEVDWGDTSVKESNDNVNVQALPVSLNGNIDDDSEEFPSDVIMNQAHGDILIDINDRFPREFFTDIFSKAVLEEDPSSFHQLTSNGVGLSVNMENCDPKRWSYFQKLAQAGTDNVSLIDQDHLGFAPAIGKVVGDDRAQHVTPLTTDEVSLNHAESHLDFVEENLLGRTGGERKSNYDHSQVNDIESMQFDAMMENIRAQESECEVGMFEKRNNNLHPPDPSLEEIDTSSLQVIMNDDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKICFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVEDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDFRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPMRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNHCDSEWRTLMEQCWAPNPAARPSFTEIARRLRIMSAAAKSSGQKASR 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01398 1298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1148 1160 IPR008271 GO:0004672|GO:0006468
Vian11g01398 1298 SMART serkin_6 1023 1285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01398 1298 SMART PB1_new 247 334 IPR000270 GO:0005515
Vian11g01398 1298 Pfam Protein tyrosine and serine/threonine kinase 1024 1282 IPR001245 GO:0004672|GO:0006468
Vian11g01398 1298 PANTHER SERINE-THREONINE PROTEIN KINASE 277 1283 - -
Vian11g01398 1298 CDD STKc_MAP3K-like 1029 1282 - -
Vian11g01398 1298 MobiDBLite consensus disorder prediction 571 600 - -
Vian11g01398 1298 Gene3D Phosphorylase Kinase; domain 1 1016 1110 - -
Vian11g01398 1298 MobiDBLite consensus disorder prediction 565 606 - -
Vian11g01398 1298 PRINTS Tyrosine kinase catalytic domain signature 1209 1231 IPR001245 GO:0004672|GO:0006468
Vian11g01398 1298 PRINTS Tyrosine kinase catalytic domain signature 1105 1118 IPR001245 GO:0004672|GO:0006468
Vian11g01398 1298 PRINTS Tyrosine kinase catalytic domain signature 1142 1160 IPR001245 GO:0004672|GO:0006468
Vian11g01398 1298 PRINTS Tyrosine kinase catalytic domain signature 1253 1275 IPR001245 GO:0004672|GO:0006468
Vian11g01398 1298 Pfam PB1 domain 249 332 IPR000270 GO:0005515
Vian11g01398 1298 CDD PB1_UP2 236 332 - -
Vian11g01398 1298 ProSitePatterns Protein kinases ATP-binding region signature. 1029 1054 IPR017441 GO:0005524
Vian11g01398 1298 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1111 1298 - -
Vian11g01398 1298 ProSiteProfiles Protein kinase domain profile. 1023 1284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01398 1298 MobiDBLite consensus disorder prediction 625 658 - -
Vian11g01398 1298 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1016 1110 - -
Vian11g01398 1298 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 252 334 - -
Vian11g01398 1298 Gene3D - 253 333 - -
Vian11g01398 1298 Gene3D Transferase(Phosphotransferase) domain 1 1111 1298 - -
Vian11g01398 1298 SUPERFAMILY CAD & PB1 domains 249 336 - -
Vian11g01398 1298 SUPERFAMILY Protein kinase-like (PK-like) 1006 1282 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01398 Vian-Chr11 23431142 23442748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01398 106 638 MAP Kinase Kinase Kinase AT1G16270 38.386 4.02e-84 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vian11g01398 PK_Tyr_Ser-Thr 5.1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01398 - - gmx:100799639 2002.25