Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01393 ATGAAAGAGAATGGTAGAAAACTAGGTACCATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGGTGCACGAGAGATTGTGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTGCACAAGGTTTTCGGGGCTAGCAATGTGAACAAAATGCTACAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTAAGTTCAATGGTGTATGAAGCAAATGCAAGAGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATTTCCTCACTCCAACAACAAGTTGATGAGCTCCAAACCCAATTGGCACTGGCACAAGCAGAGGTTGTTCACATGAGAATGAGCCAATTCTCACCACCATCATCGGATCAACACCACCACCGTCAAGCCTCCCTAATGCCTCATGAACCCTCCAATTCATCATCAGAAAACATGTTCCAATCTAGCAGGGTCTTGTCTTCACAAAGCAAGTCTTTTTTTGGCATGGACATGGTCGTTGATCAGACCATCATGGGGCAATCTTTGTGGTCATACTAG 549 0.4627 MKENGRKLGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDELQTQLALAQAEVVHMRMSQFSPPSSDQHHHRQASLMPHEPSNSSSENMFQSSRVLSSQSKSFFGMDMVVDQTIMGQSLWSY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01393 182 Coils Coil 92 112 - -
Vian11g01393 182 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Vian11g01393 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 152 - -
Vian11g01393 182 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vian11g01393 182 MobiDBLite consensus disorder prediction 120 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01393 Vian-Chr11 23319474 23323594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01393 1 181 AS2 family AT1G31320 63.043 8.42e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian11g01393 LOB 1.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01393 - - gmx:100803188 304.679