Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01376 ATGAGTCTCCCACCTGGGTTTAGGTTCCACCCTACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGGAAAATAACAGGTCGTTCAATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTGCCAGTGCCTGGTGCTGCTCTTTCATCTTTGAAGGATTCCTATTCGTTGTGTCGCATTTTCAAGAAGATGATTCAAATGCCTGCGAAACCTAGTAAAGAAGAAGAACAACAAGCCGAGGATGCAAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTGGGAGAAGACTCAAGTGGCACTGAGTTTTCCAGAGAAATGGAAACCGTGGAGGAAAAAATTCTCAATCACGAATACCCTAAATTTCCTTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACATGCACACCCACAGACACTGGTATAGCAGAAGATTTTCAACCACACTTTGCTTGCGATGAAGCAAACAGTGCAACTAATTCATATACAATGGGAATGGGATACCCCAGCAATCTATTTCAGGATGTGGAATTAATACCTTCTTTTGCTGCCATGCATTATCAATTCCCATACACACCTTTGGTGCTGGAAGACTTCCCTCAAATTACATTGCCAGAGACAAAGTCAACGAAACCAGAAATGAGTGATCCCTGCATGTTATATGACAGACGCAGGGACTGCATGAATGGAACGCTAGAAGAGATAATCTCTTTGTGTTGCACTCAAGATAATAACGTCCCTTTTCCCATGCTAGAATGA 786 0.4237 MSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPVPGAALSSLKDSYSLCRIFKKMIQMPAKPSKEEEQQAEDAKKESMWISEEQMLGEDSSGTEFSREMETVEEKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSATNSYTMGMGYPSNLFQDVELIPSFAAMHYQFPYTPLVLEDFPQITLPETKSTKPEMSDPCMLYDRRRDCMNGTLEEIISLCCTQDNNVPFPMLE 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01376 261 Gene3D NAC domain 12 100 IPR036093 GO:0003677|GO:0006355
Vian11g01376 261 Pfam No apical meristem (NAM) protein 4 69 IPR003441 GO:0003677|GO:0006355
Vian11g01376 261 SUPERFAMILY NAC domain 2 49 IPR036093 GO:0003677|GO:0006355
Vian11g01376 261 MobiDBLite consensus disorder prediction 76 98 - -
Vian11g01376 261 MobiDBLite consensus disorder prediction 76 114 - -
Vian11g01376 261 ProSiteProfiles NAC domain profile. 3 149 IPR003441 GO:0003677|GO:0006355
Vian11g01376 261 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01376 Vian-Chr11 22952474 22956384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01376 1 49 NAC Transcription Factor Family AT1G54330 85.714 8.31e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian11g01376 NAM 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01376 - - gmx:100808325 377.481