Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01373 ATGAAGCGGGTTCGCCATCCGAATGTGGTGCTCTTCATGGGCTCTGTTACAAAACGCCCCCATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATACCGCCTGATACACAGACCAGCATCTGGTGAAATTCTGGACAAGAGGAAGAGACTGCGGATGGCATTGGATGTGGCTAAAGGAATCAATTATCTCCACTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAATCCCCAAACTTGTTAGTGGATAAAAATTGGACTGTGAAGGATTACAAGACACAATCCACGAAAGGCAAATCAGTTTTGCACTTAGCAATCGAGAAAGGCTACCGAGACATTGTTGATGATTTATTGACCAGAGTAATTCCTCGTTACCAAGCTATGGCTTCTTCATCTGGGTCCAAGAGGATTAAGACCACTGCTGGTCTAAGGGAAAACAGAAGGAAAGAGAAGATATACTCTGATATCTTCTTAACCAAGGACCATAAGAAGCACTTCTCCAATGTCCAGAACAGAAAACTTTTGATGGAGAGGAAAGTCACCCTTCTACCTCAAGATGTGCCAGACTTCTCCAATGAGATTATGGAGAGGCAATGGAGCCATTTAACCACATACCCAGAACCAGCCAACATAGCCATTGTCCAAGAATTTTATGCAAATGCCAAATCCTTCTCCCCGGACACAGAACCCTTCTGGAGCTATGTGCGTGGTCAGCGGATTCCATTCAATGCTGACACTATAAATGAGTTCCTCAACACAGAGTGGGAAGATGATGATGAGATATGTGGCTACGCCGAGCTGATGGCGACTGAGCTAGACCATGAGGAGATTGAGCAAACCTTATGTATCACAGGAGGCACATTTCAAAGAAATAGGCAGCAACAACCTCTTCATATCAAGAGGAAATCAAAGAAGGCAAGTCCAAGGGGCAGCTGGATTACAGACGAGGACTCTAAAAGCTTGGTGAGTGTCCAGTCAGATCGGTTTCGGAGGCACTCGATCGCAGGTTCATCGTTGTTACTTAAAAGTTGTGTTACATGTCATATGGAAAGAGACAACGATGGATTGTTTCCTCTTCATTTGGCTTCTGCATGTGGACATACTAAAGTAGTAAAGAAATTGCTAGAAATTTGTCCAAATCCCAAAGAAATAGTTGATGAGAAAGGTCGAAATATTGTTCACATTGCAGCTATAATGGGTCAATCTAATGTGATAACGTACTTGTTGCAAAATGCAAAAGATGAAGTTAAAGGTATGATAAATGGCAAGGATTATGATGGAAACACTCCCTTGCATTTGGCTGCCTCATATTGTCATCCAAAAGTTGTGCAAGTCTTGACATGGGACAAAAGGGTTGATCTTCATTGGCTTAACAACAACAACCAAACAGCTTTCGATGCTTTTGAGCAATTTAAACAAGAAGATAATCCGCCCTTCCCACAGGCAACATCAAGCAACCCAATAATGCGATGGATTTCTTATGTCCCTTTCAAGATTCTCACATGGTTATTTGAGAAAAGTTCAACTGAAGAATCTTTGTGCACAGCAGTTCACTGCCCAATACGAGAGATCTTAGCGAAAGAAAAGAAGGAGAAAAGCTTAGTAGTACCTGAGAACAAACCTTTACCTGGATTGTGTGGCAGCTCCGACATTCGGCCTTTGAAGATTGATTATTTTAGATATGCACATGAGCAGGTTGCAGCCCTTGGTGCTATTAGCAACCTAGTGATCGACTTTACTCCACAGAAGTCAAAATTCATAGAATGTGGAGATCCAGAGCCTTTTGTCCAAGAACAAGCTCTGGCCCTTGTTCGCAATTTGGTTGATGGATGTATAGATTGTATTGATGGATGTATAGATTGTGTAAAGAAAAGGAGCATGATGAAATTTCTAAGGTGTGGAGGGAAGATATGTATGAATAATAATGACGTGGAAAATAACTACAAGGGAGAAGAACAACCTTCAAGGAATGTGATAGAAAGCTCAGAAGAACGACGCAGTGATGAAGCTAAAGCACATGGTTGGTGGTTGTTGCCAAAGAAAACATACGATTCAATAAAAGAGAACAAGCCTGAATCCGATTGGAGCGAAATAGACGAAGAGACTATACTGCAACAGAGGCCTAGAGGAAACACGGTGCTGCATATAGCAGCTCTCTACGGAAATGATAAGTGTGTGGAAAAGGTACTTCAAATCGGTGAACACCTTTTGCTAACAATAAATGGTAATGGTGATACACCACTGCATGTTGCTGCAAGAGCTGGCAAAATCTCTACTCTCGAGAAATTGGTGGCTGCACTTCTCCATCGAAATTATGAAGAAGCAAAAGAGGCAATCCTTATAACCAACAAACAAGGAAATACTTTCTTCCATGAGGCCTTATTGAACGGTCACAAAAATGTTATGAACATTCTAGTTTCTTCACCAGGCTTCAAGCAATTGGCAGAGGAAACTGTTTTTGTTAGTTCAAACAATAACGACAAATCAGTTCTGGGCTTAGCGATTGAGAAAGGTTACGAGGACATTGTTGATGATGTATTGACCAGAATGATTCCAACTAATGAAGTGTATGAAAGAAGGAGATATAGGAGGAAGGAGGACGAGCGAGCAGGGCAACAAGGGAGAAGGACGAGCGGCATGGACGAGCAGGACACGGACGAACGTCCGGAGCAAGGGGCGAGGACGAGCGTCCCAACAAGGGACGAGGACGAACGTCAAAACACGGACGAGCAGGACACGGACGAACGTCCGGGATAA 2766 0.4291 MKRVRHPNVVLFMGSVTKRPHLSIVTEYLPRGSLYRLIHRPASGEILDKRKRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKDYKTQSTKGKSVLHLAIEKGYRDIVDDLLTRVIPRYQAMASSSGSKRIKTTAGLRENRRKEKIYSDIFLTKDHKKHFSNVQNRKLLMERKVTLLPQDVPDFSNEIMERQWSHLTTYPEPANIAIVQEFYANAKSFSPDTEPFWSYVRGQRIPFNADTINEFLNTEWEDDDEICGYAELMATELDHEEIEQTLCITGGTFQRNRQQQPLHIKRKSKKASPRGSWITDEDSKSLVSVQSDRFRRHSIAGSSLLLKSCVTCHMERDNDGLFPLHLASACGHTKVVKKLLEICPNPKEIVDEKGRNIVHIAAIMGQSNVITYLLQNAKDEVKGMINGKDYDGNTPLHLAASYCHPKVVQVLTWDKRVDLHWLNNNNQTAFDAFEQFKQEDNPPFPQATSSNPIMRWISYVPFKILTWLFEKSSTEESLCTAVHCPIREILAKEKKEKSLVVPENKPLPGLCGSSDIRPLKIDYFRYAHEQVAALGAISNLVIDFTPQKSKFIECGDPEPFVQEQALALVRNLVDGCIDCIDGCIDCVKKRSMMKFLRCGGKICMNNNDVENNYKGEEQPSRNVIESSEERRSDEAKAHGWWLLPKKTYDSIKENKPESDWSEIDEETILQQRPRGNTVLHIAALYGNDKCVEKVLQIGEHLLLTINGNGDTPLHVAARAGKISTLEKLVAALLHRNYEEAKEAILITNKQGNTFFHEALLNGHKNVMNILVSSPGFKQLAEETVFVSSNNNDKSVLGLAIEKGYEDIVDDVLTRMIPTNEVYERRRYRRKEDERAGQQGRRTSGMDEQDTDERPEQGARTSVPTRDEDERQNTDEQDTDERPG 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01373 921 MobiDBLite consensus disorder prediction 296 316 - -
Vian11g01373 921 ProSiteProfiles Ankyrin repeat region circular profile. 429 449 - -
Vian11g01373 921 PANTHER NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED 100 479 - -
Vian11g01373 921 ProSiteProfiles Ankyrin repeat region circular profile. 712 736 - -
Vian11g01373 921 ProSiteProfiles Ankyrin repeat profile. 357 379 IPR002110 GO:0005515
Vian11g01373 921 ProSiteProfiles Ankyrin repeat region circular profile. 357 379 - -
Vian11g01373 921 ProSiteProfiles Ankyrin repeat region circular profile. 746 767 - -
Vian11g01373 921 SUPERFAMILY Protein kinase-like (PK-like) 1 92 IPR011009 -
Vian11g01373 921 Gene3D - 692 862 IPR036770 -
Vian11g01373 921 Gene3D - 332 483 IPR036770 -
Vian11g01373 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 73 85 IPR008271 GO:0004672|GO:0006468
Vian11g01373 921 Pfam Ankyrin repeats (3 copies) 717 813 IPR002110 GO:0005515
Vian11g01373 921 Pfam Ankyrin repeats (3 copies) 362 455 IPR002110 GO:0005515
Vian11g01373 921 SUPERFAMILY Ankyrin repeat 710 848 IPR036770 -
Vian11g01373 921 SUPERFAMILY Ankyrin repeat 93 470 IPR036770 -
Vian11g01373 921 ProSiteProfiles Ankyrin repeat profile. 429 449 IPR002110 GO:0005515
Vian11g01373 921 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
Vian11g01373 921 SMART serkin_6 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01373 921 MobiDBLite consensus disorder prediction 865 921 - -
Vian11g01373 921 Pfam Protein tyrosine and serine/threonine kinase 1 92 IPR001245 GO:0004672|GO:0006468
Vian11g01373 921 ProSiteProfiles Protein kinase domain profile. 1 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01373 921 SMART ANK_2a 429 459 IPR002110 GO:0005515
Vian11g01373 921 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vian11g01373 921 SMART ANK_2a 746 775 IPR002110 GO:0005515
Vian11g01373 921 SMART ANK_2a 391 420 IPR002110 GO:0005515
Vian11g01373 921 SMART ANK_2a 788 818 IPR002110 GO:0005515
Vian11g01373 921 SMART ANK_2a 357 386 IPR002110 GO:0005515
Vian11g01373 921 SMART ANK_2a 829 858 IPR002110 GO:0005515
Vian11g01373 921 SMART ANK_2a 712 741 IPR002110 GO:0005515
Vian11g01373 921 Pfam Putative plant transposon protein 199 309 IPR046796 -
Vian11g01373 921 ProSiteProfiles Ankyrin repeat profile. 746 778 IPR002110 GO:0005515
Vian11g01373 921 ProSiteProfiles Ankyrin repeat profile. 712 736 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01373 Vian-Chr11 22843017 22915323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01373 1 92 MAP Kinase Kinase Kinase AT4G24480 88.043 1.37e-48 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vian11g01373 Ank_2 6.4e-14 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01373 - - var:108332625 396.741