Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01328 ATGGTGTACTGCAGTCACTGTGCCAAAAATGTAGCTGGGGAGAGAATGGATGATGGTTTCTTATGTTGTCTAATCTGTGGGAAGGTGTTGGAAGATTACTTTTTTACTGAGGAGCCTACATTTGTCAAGAATGCGGCAGGGCAGAGTAAATTATCAGGTAATTATGTAAGAACAGTTCAAAGCGACTTCTCCGAGTCACGTCAAAGGACTTTAGATAGAGCTCATGAAGAGATTAAATTTCTAAGTTCTGGCCTTGGAGTTCAGGATGAACATATGGCTGACCAAGCACTGGCCTTTTATAAAATAGCGCTTGGGCAAAACTTCACTCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTTCGGCACAACAACAAGCCGTACCTTCTTATTGATTTTTCAAATTATTTAAGAATAGATGTTTATGCTCTAGGATCAGTTTTCTTGCAGCTTTGTGAAGTGCTGAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTATTGATCCTAATTTGATCAAGCGAGGGAGTAAGGCAGTCTCTGATACTGCTCTGACCATTGTGGCAAGTATGAAACGAGACTGGATGCAGACAGGGAGGAAACCTAGTGGTCTATGTGGTGCGGCATTATACATTTCTGCTTTTGCACATGGAATTAAATGCTCTAAACCCGATATTCTTAGAATCGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTTGAATTTGAGAATACGAAATGTTCTAGCTTGACAGTTGAGGAGTTGGATACATTGGCAAAGGAGCAAGAAAAAAATCCAACAGTAATGCCAGAAGGTGAATTGAAAGGGGTTACTTCGAAAGATCTACTATGTGAGCACAAGGACAGTGGGGCTTCCCATTTTGCACTTGGATTGTGTGAAGAATGCTATAAGGACTTAGATCAGCTCTCTGGTGGACTTGGTGGTGGTTCGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAAAGAGAGAAAAGGGCACTTCTCAAAGAGAGTGTTGATGAAGCATGTGATTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCATAGAGAAGATTTGCCTGTGCCAGAAGGGGCTAATGTTGCGCATGAGTCCATTAAAGACGGTGAATATGATGATTCATTTAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGATGAAGACGTTGATTTATACATTCATGATGAGAAGGAGAGGAAGATCAAGAAGATACTGTGGGAAGCAGCAAATCGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCACTTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCAGAGGATTTACTTGCAGCAAGAGAGCTCGCCGCATCTGCTTCTGAAGCTGTGGCAAAATCCAGAAAGGGGGACGGCAACAAATTTACCCTCAGCCATGTTTTCAAGGTTGCAGGTTTATATGCATTGTTTGAATTCTTGTTTGAAAAGGGGACTCTATCCCGGGTCTCTGAGGAGCTGCAAGATCTAGAATTTGAGAGTTTAGGGTTTAGAGGTCCAAGGCCTGATTCCCCTGCCGAAAAAACGGATGATCCCAAGAAAGAAAAGAAAGCACGATTTGATCCGCCCCTAGATAATCATGACAACTTACAGTCATTTGAGCACAAAAATGACGATGAGATGGGATCAGTGGATGAATTTGAAGATGATATGGGGGAGATGTATCAAAGTGGGTTGTCTACTGATAATATTGCAGATACATATTTCCCTGAGGATGATGGATACGGCTATAACGATTATGATTATTAA 1827 0.4204 MVYCSHCAKNVAGERMDDGFLCCLICGKVLEDYFFTEEPTFVKNAAGQSKLSGNYVRTVQSDFSESRQRTLDRAHEEIKFLSSGLGVQDEHMADQALAFYKIALGQNFTRGRKSEQVQAACLYIAFRHNNKPYLLIDFSNYLRIDVYALGSVFLQLCEVLRLGEHPIVQKPIDPNLIKRGSKAVSDTALTIVASMKRDWMQTGRKPSGLCGAALYISAFAHGIKCSKPDILRIVHVCEATLTKRLVEFENTKCSSLTVEELDTLAKEQEKNPTVMPEGELKGVTSKDLLCEHKDSGASHFALGLCEECYKDLDQLSGGLGGGSDPPAFQRAEREREKRALLKESVDEACDLANASNDQFKSHREDLPVPEGANVAHESIKDGEYDDSFREDESETLSDIDDEDVDLYIHDEKERKIKKILWEAANREYLEEQAAKEALAAANKKAFEANFENCSEDLLAARELAASASEAVAKSRKGDGNKFTLSHVFKVAGLYALFEFLFEKGTLSRVSEELQDLEFESLGFRGPRPDSPAEKTDDPKKEKKARFDPPLDNHDNLQSFEHKNDDEMGSVDEFEDDMGEMYQSGLSTDNIADTYFPEDDGYGYNDYDY 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01328 608 Gene3D - 63 164 - -
Vian11g01328 608 MobiDBLite consensus disorder prediction 529 568 - -
Vian11g01328 608 SUPERFAMILY Cyclin-like 75 162 IPR036915 -
Vian11g01328 608 Pfam Brf1-like TBP-binding domain 397 455 IPR011665 -
Vian11g01328 608 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Vian11g01328 608 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Vian11g01328 608 PRINTS Transcription initiation factor IIB signature 204 220 IPR000812 GO:0006352|GO:0070897
Vian11g01328 608 MobiDBLite consensus disorder prediction 520 608 - -
Vian11g01328 608 SUPERFAMILY Cyclin-like 181 258 IPR036915 -
Vian11g01328 608 Gene3D - 172 255 - -
Vian11g01328 608 Gene3D Single helix bin 374 438 - -
Vian11g01328 608 Pfam Transcription factor TFIIB repeat 182 250 IPR013150 GO:0017025
Vian11g01328 608 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Vian11g01328 608 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 443 IPR000812 GO:0006352|GO:0070897
Vian11g01328 608 FunFam Transcription factor IIIB subunit 171 253 - -
Vian11g01328 608 CDD CYCLIN_TFIIIB90_rpt2 170 251 - -
Vian11g01328 608 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
Vian11g01328 608 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01328 Vian-Chr11 21818606 21828914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01328 1 476 Inorganic Solute Cotransporters AT2G01280 42.424 5.78e-98 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01328 K15196 - gmx:100817609 821.231