Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01314 ATGGAACTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTCGGCTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACTGGGGTTAGGCTTCAGCACCGCGTTATCAATTGGGCCAATCATCACTACACGAAAGGATCAGCAAGATGAACAAGAAGAATTTGAAGAAGAAGAAGAAACAAAGCAGAAGAGCAACAACAACATCAACACTGATACAACAGAAGATCCTTCCGAACCCAACAACAACAACAACCCAGTTCTGCATCAGCTCGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTTTCATCTGAGTTGGGAGGTTCTTCCAGGGGCTTGGACGTGAACGCACAGCCGCCGCAGGCGGAGGATGAGGCAGAGGAGGTGGCGGCGCTGTCATCATCTCCGAACAGCGCAGCCTCGTCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTATAAAAGGAACTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAGGATGATAACAACGGCAGCGGCGGCAACGCCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGACCTCGCCAAGTAGAAGTATGGTTTCAAAACCGAAGAGCAAGGACGAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAAAGGTGTTGTGAGACACTAACGGAAGAGAATAGGAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGAGTTCAAACCCATTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACTTCCTCCTCTCAGAGTGCTCCTAATGCCACCATCAATGCAAATTCAGGAGCCATGACCATTGTCAAAAGCACTGCCACCAACAATGACTCACCCTCCAAAGCCATTGGATTCCCATTTAGTAAACCCAGGTTTCATCCATTTGTCCACACTACCCAACAACCCCATCAACACCAATCTCCATCATCTTGA 1137 0.4697 MELGLSLGDSSRPLLGFMEKPREASNQLGLGFSTALSIGPIITTRKDQQDEQEEFEEEEETKQKSNNNINTDTTEDPSEPNNNNNPVLHQLDLLPQLYLPWHPPSENGSFSSELGGSSRGLDVNAQPPQAEDEAEEVAALSSSPNSAASSFQMDLCIYNRGGSFYKRNYEGEAYDQRASSRASDEDDNNGSGGNARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKSSNPFYMQLPATTLTMCPSCERVATNSTSTSSSQSAPNATINANSGAMTIVKSTATNNDSPSKAIGFPFSKPRFHPFVHTTQQPHQHQSPSS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01314 378 Pfam Homeodomain 196 250 IPR001356 GO:0003677
Vian11g01314 378 SMART HOX_1 194 256 IPR001356 GO:0003677
Vian11g01314 378 MobiDBLite consensus disorder prediction 66 90 - -
Vian11g01314 378 MobiDBLite consensus disorder prediction 41 146 - -
Vian11g01314 378 SUPERFAMILY Homeodomain-like 182 253 IPR009057 -
Vian11g01314 378 MobiDBLite consensus disorder prediction 174 200 - -
Vian11g01314 378 MobiDBLite consensus disorder prediction 105 124 - -
Vian11g01314 378 FunFam Homeobox-leucine zipper protein 18 179 257 - -
Vian11g01314 378 Pfam Homeobox associated leucine zipper 252 286 IPR003106 GO:0006355|GO:0043565
Vian11g01314 378 SMART halz 252 295 IPR003106 GO:0006355|GO:0043565
Vian11g01314 378 Coils Coil 45 68 - -
Vian11g01314 378 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 65 326 - -
Vian11g01314 378 MobiDBLite consensus disorder prediction 340 378 - -
Vian11g01314 378 Coils Coil 265 288 - -
Vian11g01314 378 CDD homeodomain 196 253 IPR001356 GO:0003677
Vian11g01314 378 Gene3D - 200 250 - -
Vian11g01314 378 ProSiteProfiles 'Homeobox' domain profile. 192 252 IPR001356 GO:0003677
Vian11g01314 378 ProSitePatterns 'Homeobox' domain signature. 227 250 IPR017970 GO:0000981|GO:0006355
Vian11g01314 378 MobiDBLite consensus disorder prediction 362 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01314 Vian-Chr11 21581709 21583594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01314 119 308 Homeobox Transcription Factor Family AT3G60390 59.091 7.31e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian11g01314 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01314 K09338 - gmx:100778742 526.168