Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01307 ATGGAAAACCACCAAAACCACAAGGGAGAGGCAGAACCTGATAGAGAGAACAACCAAAACCAAAACAATAACCAGGCGTGGGGCACGTGGGAGGAGTTGTTGCTAGCGTTCGCTGTGAACCGCCATGGCTTCAAGGACTGGGACACCGTCGCCATGGAGGTTCAGTCGCGCGCCACGCGCCTCCTCGCCACGGCGCGCCACTGCGAGCAGAAATTTCACGATCTCAGCCGCCGATTCGCCGACCAATGCAACGACGGTGTTACGCCGCCGCAACATGACGGCGAAGCCACCGGGGACAACTCCGATCACGTCCCTTGGCTGGACGAATTGCGTAAACTCCGTGTTGACGAGCTCCGCCGCGAGGTCCAGCGGCGCGACGATTCCATTATGTCGCTGCAGTTGGAGGTGAAGAGGCTGGAGGAGGAGAAAGCGAAAGAGAATGACGGTAAAGACGGCGAGAAACCAGATCTGGCGGTTCCCGGCGAAGTGCGGCCGGAAAACGACAAAACCGGTGGAGAAGTTGAAGAGGTTGGACCGGCGAATTCCGGACCGGAGAGAACCGCAAACGCTGACAAGATGTTGCCAACAACGGGCGACGAATCCGACCGGGAGAATCAATCAGTTAACGAGTCTAACTCGACCGGTTCGAGGTTTGATAAAACCGGAGAAGGTGATGCAAAGTTAAAAGTCGAACCGGATCCGGTTCAGACCGGTTCAAAAGAAGTGGACCCGGTTGCGAGGAAGGGAAAACCGGTTGGGGAGGAATCGAATAATGGAAGCTACGATGCCTTGGCGAAGGTGCCAACGTGTGAGTCGGTGCCTCCAAGTGACGAGAGGAAGGTGGAGCAGGATGATGACTCGTCTGAGTTGCACGACTCGGTGGCTCACTCCGGGGAGGGAGGGACGAGGGAGAGCAGCGAAGTGCAGAGCTCGGCCAGCTTGACGCGAAAGAGGAAGACGCGACGTAGAAAAGATGTTTCCGGCGGCGACGGTCGCGGAGGCGGCGCTTCTACACTGCCGGAGAACGAAGAGGTAGCGGTTAAATCAGAACCGTTGGTTGGTATTTTGGAGTTGATCAAGGGACATGAGCATTGTTCATTAATCGAGAGTCGTCTTGAGAGCCAGCTGGAGTCGGACAGATACAAAGACATAGTGAAACAGCCACTGGACATGGAAACCATACAATCAAGAATCCAGAAAGGTCAGTATTTCTCATGCACTAGTGCATTCTTCCGCGACCTCCTCCTCCTGTTCACCAACGCTACCGTCATCTTCCCCGTTGACTCTCCAGAGTCACAGGCGGCAAGGCAGCTGCACCGCCTTGTCACCACCGAGATGAAGAACCACGGCCAAGCACAATCCGACCCTATCCCCCGGAAGAGCGATTCACTCCCTCCAAACATACCAGTAGCCAAAGCAGATTCTCTCTTGTCCAAGAACAAAGCCTCTGGTCCCATATTGGTTTGCCGCAAACGCAGTACAATGTCAGCGAAACCTTCCTCGACCAATTTTGGCCAAAAGAATGACCAACCCATCTTCAACGACAAGAAGGAAAGGGCACCTTCTGATTCAAAACCTCCTACGAAACCTTCTTCTTCTGATACAGACGAAGACGAGCCCCCCAAGGCCAAGGAGAAGCCTGTCACTGGAGCGAGAAGTCTGAGAAGGAGCAACAAGAACCTCAACAATAAGAAACTTCCCTCTAACTCCACTCCTAAGGCGGGGTCCTCGGGTAACAAGCCATCAGAGAGTCTTAAACCAGAGAAGAGCAAAGCAGAGGGAGGGGCAGACAAGAAGAGGAGTGCTGCTGCAGATTTCTTGAAACGGATAAAGCGAAATACTTCAGTGGACGCAGTGAAAGGTGGTGGTGCCGGAGGAGGAGGAAGTAGTAGCAGCAGCAAGGGAGGTGGAGGTGGTGTTGGTGCCAAAGAGCAGAAGAAAATGGTGAATAATGTAAAAGGGGATAAAGGGAAAGAAAGGGCATCAAGGCATGGCGTTGGAGGGGGATCAGGGTCTGCGGATAAAAGGAATAAGAACATTGAGAACAGCTCTCAGTCGAAGAGGAGTGTTGGTAGACCTCCAAAGAAGGCAGCAGAGACAAATGCAGGAAGTTCAAAGCGTGGGAGGGAAAATAGTGCTAGTGCTGGCAAAGATAAGCGACCCAAGAAACGTTCCAAGAAATGA 2184 0.5339 MENHQNHKGEAEPDRENNQNQNNNQAWGTWEELLLAFAVNRHGFKDWDTVAMEVQSRATRLLATARHCEQKFHDLSRRFADQCNDGVTPPQHDGEATGDNSDHVPWLDELRKLRVDELRREVQRRDDSIMSLQLEVKRLEEEKAKENDGKDGEKPDLAVPGEVRPENDKTGGEVEEVGPANSGPERTANADKMLPTTGDESDRENQSVNESNSTGSRFDKTGEGDAKLKVEPDPVQTGSKEVDPVARKGKPVGEESNNGSYDALAKVPTCESVPPSDERKVEQDDDSSELHDSVAHSGEGGTRESSEVQSSASLTRKRKTRRRKDVSGGDGRGGGASTLPENEEVAVKSEPLVGILELIKGHEHCSLIESRLESQLESDRYKDIVKQPLDMETIQSRIQKGQYFSCTSAFFRDLLLLFTNATVIFPVDSPESQAARQLHRLVTTEMKNHGQAQSDPIPRKSDSLPPNIPVAKADSLLSKNKASGPILVCRKRSTMSAKPSSTNFGQKNDQPIFNDKKERAPSDSKPPTKPSSSDTDEDEPPKAKEKPVTGARSLRRSNKNLNNKKLPSNSTPKAGSSGNKPSESLKPEKSKAEGGADKKRSAAADFLKRIKRNTSVDAVKGGGAGGGGSSSSSKGGGGGVGAKEQKKMVNNVKGDKGKERASRHGVGGGSGSADKRNKNIENSSQSKRSVGRPPKKAAETNAGSSKRGRENSASAGKDKRPKKRSKK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01307 727 Pfam Myb-like DNA-binding domain 25 74 IPR001005 -
Vian11g01307 727 MobiDBLite consensus disorder prediction 299 313 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 1 15 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 83 103 - -
Vian11g01307 727 Coils Coil 115 149 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 511 552 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 140 173 - -
Vian11g01307 727 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 15 727 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 140 345 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 648 663 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 220 236 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 1 23 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 446 460 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 584 615 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 675 690 - -
Vian11g01307 727 CDD Bromodomain 381 446 - -
Vian11g01307 727 Pfam Bromodomain 377 436 IPR001487 GO:0005515
Vian11g01307 727 SUPERFAMILY Bromodomain 353 453 IPR036427 GO:0005515
Vian11g01307 727 CDD SANT 26 75 IPR001005 -
Vian11g01307 727 MobiDBLite consensus disorder prediction 553 583 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 446 476 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 488 727 - -
Vian11g01307 727 MobiDBLite consensus disorder prediction 494 510 - -
Vian11g01307 727 SMART bromo_6 125 451 IPR001487 GO:0005515
Vian11g01307 727 MobiDBLite consensus disorder prediction 273 298 - -
Vian11g01307 727 ProSiteProfiles Bromodomain profile. 360 421 IPR001487 GO:0005515
Vian11g01307 727 Gene3D - 341 460 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01307 Vian-Chr11 21439689 21444241 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian11g01307 Bromodomain 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01307 - - gmx:100811021 1015.37