Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01303 ATGATTGCACATTCTTCTGAATTTGAGAATATTGCTATTCGAGAAGAAGAAGAAAATGAGCTAGAGATGTTGGCGCGCACATCATGTCCATTAGAAATTAAGTTGTACATATCTCGAGGTTCTATGGATTCTTTTTCTTTGGTATCTGATGCTGCATATATTAGTGCAAGCTTGGCTCGAATAACACGGGCATTATTTGGGATTTGTTTACGAAGAGGCTGGTGTGAGATGACTCTGTTAATGTTGGAATATAGCAAAGCTGTGGATCGTCAAGTTTGGCCACATCAACATTCTCTTAGACAATTTGACAATCACCTTTCTGCAGAAATATTCAGAAAGCTTGAAGAGTGTGGGGCTGACCTAGATCGCCTGTTTGAGACCGAGGAAAAAGGCATTGGAGGCATTAATTCTTTGTTGGTGGAGAGGATGAGGTCATTTGGTCCTTACAATTTGTTCAATGTCTTGGGTATGCATGAGTTTGATAGTGACAGGAAGAGGATGTCAGTTATATTGGAGTACCTTGACAATTATGTGAAAGTGTTTGTCAAAGGAGCACACACATCCATGCTTAATGTGATAGACAAAGATTTAAATGCTTTAGAATTTGAGGAATGGCATGCATCCTTCGAGGCTCCAAGCACTGTTGTTTTTGGCAGGGCTGCTATGCTCCGCAAGGTTTCTAGCATTGTAGAGAACAGTCTCAGCATATTAGGATTTGCCATTGAAGATAAACTGCAGCAAGGTGTGCCTGAATCCATTGCTTATCTAGAGAATATTTACTTATGA 786 0.4008 MIAHSSEFENIAIREEEENELEMLARTSCPLEIKLYISRGSMDSFSLVSDAAYISASLARITRALFGICLRRGWCEMTLLMLEYSKAVDRQVWPHQHSLRQFDNHLSAEIFRKLEECGADLDRLFETEEKGIGGINSLLVERMRSFGPYNLFNVLGMHEFDSDRKRMSVILEYLDNYVKVFVKGAHTSMLNVIDKDLNALEFEEWHASFEAPSTVVFGRAAMLRKVSSIVENSLSILGFAIEDKLQQGVPESIAYLENIYL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01303 261 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 150 192 IPR023299 GO:0000166
Vian11g01303 261 SUPERFAMILY Sec63 N-terminal domain-like 1 137 - -
Vian11g01303 261 Pfam Cation transport ATPase (P-type) 152 190 - -
Vian11g01303 261 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 144 258 - -
Vian11g01303 261 Pfam Sec63 Brl domain 1 149 IPR004179 -
Vian11g01303 261 SMART Sec63_2 1 236 IPR004179 -
Vian11g01303 261 Gene3D - 116 253 IPR023299 GO:0000166
Vian11g01303 261 Gene3D - 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01303 Vian-Chr11 21349768 21353435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01303 138 256 Primary Pumps ATPases AT5G04930 47.097 1.81e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01303 K18663 - var:108323531 247.284