Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01302 ATGGAAAATTACAGATCCAAAAACAAGCTGAAGTCGCCGGTGATCATCACCAGGGAGAGCGCCAACACGCTCTGCACGCACATCCTCGAGGTAGGCAGCGGCTATGACGTGTTCAACAGCGTCGCCAGTTATGCGCGGCGACGGCAACGTGTGAATTGTATTTTGAGCGGCAGCGGCACCGTGACGAATGTGACCCTACGGCAGGTGGTGGGTTGGAGTGTGGTGGGAGAGTTGACCACAGCGGGACCGGTGCCTGTGATCGCAGCGTCGTTCACCAACGTGGCTTATGAACGGTTACCGTTAGAAGAAGAAGAGAAACAAGTTCAGATATCTGGTGGATGGTTGAGTGTGTGA 354 0.5452 MENYRSKNKLKSPVIITRESANTLCTHILEVGSGYDVFNSVASYARRRQRVNCILSGSGTVTNVTLRQVVGWSVVGELTTAGPVPVIAASFTNVAYERLPLEEEEKQVQISGGWLSV 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01302 117 Gene3D - 19 112 - -
Vian11g01302 117 Pfam Plants and Prokaryotes Conserved (PCC) domain 26 67 IPR005175 -
Vian11g01302 117 SUPERFAMILY AF0104/ALDC/Ptd012-like 22 107 - -
Vian11g01302 117 CDD DUF296 26 68 IPR005175 -
Vian11g01302 117 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 68 107 IPR014476 GO:0003680
Vian11g01302 117 ProSiteProfiles PPC domain profile profile. 21 117 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01302 Vian-Chr11 21337801 21339038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01302 6 109 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 48.322 1.24e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01302 - - gmx:100818680 148.288