Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01292 ATGGCTGTGCCATCATTCTCCTCTTCCTTCACCTATGACGTGTTCCTCAGCTTCAGAGGAGAAGATACTCGTTACAGTTTCACCGGCAATCTCTACAGAGCCCTTCGTGACAGAGGAATTCACACCTTCATCGACGACGAGAAGCTTCCCAAAGGAGACGAAATCACCTCTGCACTTGAGAAGGCAATCGAAGGTTCCAGAATTTTCATCATCGTTTTCTCTCGCAACTACGCCTCTTCCTCCTTTTGCTTGAACGAGCTCGCCTACATTCTTCCCTACGCTAATAGAAATGGTTTGCTGGTTTTGCCACTCTTCTACGACGTCGTTCCTTCCCACGTGCGCCACCACACGGGTAGCTTCGGAGAAGCTTTGGATACACATGAAAACAGGTTCAAAGCTACGAGTCAGGGTTTTGAGCTTAACATGGAGAAGCTCAACAAATGGAAGATGGCTCTGCGTGGAACAGCTAACTTATCTGGCTATCATTTCAAACATGGGGAGGAATATGAATACGAGTTTATCAAGAGGATAGTTGACTTGGTCTCCAACAAGATTAACCGTGCTCCTTTACACGTTGCGGATTATCCAGTTGGACTAGAGACTCGAGTGCTAGAAGTAAAGTTGCTTCTAGATATAGGATCTGATGATGGTGTCCACATGGTAGGGATCCATGGACTCGGTGGAGTTGGTAAAACCACACTTGCTCTTGCAGTGTACAATTCCATCGCTGACCATTTTGAAGGCTTGTGTTTCCTCGAAAATGTGAGAGAGAATTCAAACAAACATGGCCTACAGCATCTTCAAAGAATCCTTCTTTCTCAAATGATTGGAGAAAATAATGTCAACATAACTAGTGCGAGACAAGGGATTTCAATGATGGAGCATAGGCTACGACAGAAGAAGATTCTCTTGATTCTAGATGATGTTGACAAACATGAACAGTTACAAGCAATTGTTGGAAGACCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACTAGGGACAAACATTTGTTATCATGTCACTTGATCGAAAAATTATATAAAGTGAAGAAGTTGGAAAAGAACAATGCTCTTCGACTGCTTAGTTGGAAAGCTTTCAGAACAGAAGAAGTTGATACAAGTTATTTGAATGTAATGGATCGTGTACTAGCTTATGCTTCTGGCCATCCATTGGCTTTGGAAGTAATCGGTTCGAAGTTGTTTAGAAAAAGTGTAAAGGAATGGGAATCTGCCATCAAACAGTATGAGAAAATTCCTAACAATCAAATCCTTGAGGTGCTTAAAATAAGTTTTGATGCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTTCTTGTTGCTTCAAAGCATATGCATTGTCAGAGGTGGAAGATATACTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGGGTGTTGGTTGAAAAGTCTCTGATAAAATATGGTTATAATTCTGTAGTTACAATGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGGCAGAAATCTCCAAATAAGCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGAGATAATTAAAGTTTTGGAAGACAACTTGGGAAGTGGAGAAATTGAAATCATATGTTTAAATTCCTCCTTACCTGACAAAGAAGAAATAGTGGAATGGAACAGAAAGGTCTTCAAAAAGATGAAAAACCTCAAAACACTTATCATTAAAAATGGTAATTTTTCGGAAGGTCCTGAATATCTTCCGAATAGTTTAAGAGTACTGGAATGGTTGAAATATCCTTCACAAGGGCTACCGCCAGATTTTCGTTCAAAGCAACTTTCCTTATGCAAATTACCTTCAAGTTGTTTTGGGTCACTCGGATTGACTGAGTTTTCAAAGAAGTTCATGAATATGACTCTTCTGAATTTTGACGAATGTGAAGGTTTAACACAGATACCTGATCTATCTGGGCTGCCAAATTTAGAAAGATTTTCATTCAAGAATTGTAAGAGTTTAATTACAATCCATGACTCCATTGGCTTCCTAGGTAAGCTTAACTCCTTGAATGCTGTTGGTTGCAGCAAGCTTAGGAGTTTTCCCCCCCTCAAATTGACTTCTCTGGAAAATCTTGAACTTTCATATTGTTACAGTCTTGAGAGCTTCCCAGAAATATTAGGAAAAATGGGACAGATAACAGAACTTGTCTTGGAGGACTGTCACATAAAGGAATTGCCAATTTCATTTCAAAATCTCACCGAGCTTCAAACATTACAGTTGCGTTCGTGTCCAAGGTTAAGGTTACCTAGTAGTATAGTCATGATGCCAAAACTGGCCAACATTATTGCTTGGGAATCTAAAGGGTGGCTATTTCCAAAACAGGTCGAGGGGGAAGAGAAAATAGGCTCAATGGTGTCTTCAAACGTAGATTGTCTTTATCTCTCAGGGTGCAAACTCTCAGATCATTTTTTCCCAATAATTCTTGAATGGTTTGCTAATGTAAAAGATTTAAACCTATCAAGGAATAATTTCACGGTTCTTCCTGAATGCATCGCCAATTGTCACTTGTTATGCAAGCTTACTTTAGATGCCTGTCATAGTCTTCGAGAGATTAGAGGGATTCCACCAAACATACGACAGTTATCAGCAAGAAATTGTAAATCCTTCACTTCTTCTTGCGGAAGAACTTTACTGAATCAGAAACTGCATGAGGCTGGAAACACCATGTTTTCGTTTTCAGGAGCAAGGTTTCCAGAATGGTTCGATCACCACAGTTGGGGACCATCTTGTTCTTTCTGGGTTGGCAAAAAATTCCCTTCCATTGCTCTTTGTATTGCTATTGGACCAACTCATTTGGAACACGTTGAAATTGTTGGACCTATCATGATCATCAACAGCATTGAATGTTCATTGGATGAGGAGGAGAATCCTTATTTATATATGCTCCCTCATCACACACATATTTTCGATTTGCAACATATAGTTTTTTCAGATTATCTAGACAGATTTGTTTCAGAAAATGAATGGAACCACGTGGAGATTACATACTCAGTCGAGCAGAGATTCGAGGAAAAAGACAAACATGCGGTGACCCAAATCTCTATAGAAAATGGAATCTATGTGTTCAAACAGAATAGCAGCATGGAGGATATTCAATTCACTGATCCCCACAAAAAGAGAAGATTAGATGTTGATCCAGAGTTGTAA 3201 0.3974 MAVPSFSSSFTYDVFLSFRGEDTRYSFTGNLYRALRDRGIHTFIDDEKLPKGDEITSALEKAIEGSRIFIIVFSRNYASSSFCLNELAYILPYANRNGLLVLPLFYDVVPSHVRHHTGSFGEALDTHENRFKATSQGFELNMEKLNKWKMALRGTANLSGYHFKHGEEYEYEFIKRIVDLVSNKINRAPLHVADYPVGLETRVLEVKLLLDIGSDDGVHMVGIHGLGGVGKTTLALAVYNSIADHFEGLCFLENVRENSNKHGLQHLQRILLSQMIGENNVNITSARQGISMMEHRLRQKKILLILDDVDKHEQLQAIVGRPDWFGPGSRVIITTRDKHLLSCHLIEKLYKVKKLEKNNALRLLSWKAFRTEEVDTSYLNVMDRVLAYASGHPLALEVIGSKLFRKSVKEWESAIKQYEKIPNNQILEVLKISFDALEEVEKSVFLDISCCFKAYALSEVEDILRAHYGDCMKYHIGVLVEKSLIKYGYNSVVTMHDLIEDMGKEIVRQKSPNKPGKRSRLWSPEEIIKVLEDNLGSGEIEIICLNSSLPDKEEIVEWNRKVFKKMKNLKTLIIKNGNFSEGPEYLPNSLRVLEWLKYPSQGLPPDFRSKQLSLCKLPSSCFGSLGLTEFSKKFMNMTLLNFDECEGLTQIPDLSGLPNLERFSFKNCKSLITIHDSIGFLGKLNSLNAVGCSKLRSFPPLKLTSLENLELSYCYSLESFPEILGKMGQITELVLEDCHIKELPISFQNLTELQTLQLRSCPRLRLPSSIVMMPKLANIIAWESKGWLFPKQVEGEEKIGSMVSSNVDCLYLSGCKLSDHFFPIILEWFANVKDLNLSRNNFTVLPECIANCHLLCKLTLDACHSLREIRGIPPNIRQLSARNCKSFTSSCGRTLLNQKLHEAGNTMFSFSGARFPEWFDHHSWGPSCSFWVGKKFPSIALCIAIGPTHLEHVEIVGPIMIINSIECSLDEEENPYLYMLPHHTHIFDLQHIVFSDYLDRFVSENEWNHVEITYSVEQRFEEKDKHAVTQISIENGIYVFKQNSSMEDIQFTDPHKKRRLDVDPEL 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01292 1066 Gene3D - 354 438 IPR042197 -
Vian11g01292 1066 Gene3D Ribonuclease Inhibitor 699 785 IPR032675 -
Vian11g01292 1066 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 769 IPR044974 GO:0006952
Vian11g01292 1066 SMART till_3 11 158 IPR000157 GO:0007165
Vian11g01292 1066 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
Vian11g01292 1066 SUPERFAMILY L domain-like 554 893 - -
Vian11g01292 1066 SUPERFAMILY "Winged helix" DNA-binding domain 425 532 IPR036390 -
Vian11g01292 1066 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 187 - -
Vian11g01292 1066 Gene3D - 185 347 IPR027417 -
Vian11g01292 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 448 IPR027417 -
Vian11g01292 1066 Pfam TIR domain 12 187 IPR000157 GO:0007165
Vian11g01292 1066 Gene3D - 5 184 IPR035897 -
Vian11g01292 1066 Gene3D Ribonuclease Inhibitor 791 899 IPR032675 -
Vian11g01292 1066 PRINTS Disease resistance protein signature 220 235 - -
Vian11g01292 1066 PRINTS Disease resistance protein signature 296 310 - -
Vian11g01292 1066 PRINTS Disease resistance protein signature 701 717 - -
Vian11g01292 1066 PRINTS Disease resistance protein signature 389 403 - -
Vian11g01292 1066 Pfam NB-ARC domain 205 422 IPR002182 GO:0043531
Vian11g01292 1066 SMART AAA_5 217 351 IPR003593 GO:0016887
Vian11g01292 1066 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 161 IPR035897 -
Vian11g01292 1066 Gene3D Ribonuclease Inhibitor 546 698 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01292 Vian-Chr11 21107336 21113429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01292 4 850 WRKY Transcription Factor Family AT4G12020 29.714 4.27e-76 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01292 - - gmx:100780257 1312.75