Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01291 ATGGCGCCGAAGAAGCCGAGAAGCGTGTCAAGGAACCCTGAACTCATTAGGGGTATTGGGAAGTACTCAAGGTCCCAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAACACGGCGGCGTTTTCCCTCGCCACGACCCTTCGCCCAAGCCCGACGCCCCGGCCCAGAAGCCTCCCAAGTTTTACCCCGCTGACGATGTCAGGAAGCCCCTCGTCAACAAGCACAAGCCCAAGCCCGCCAAACTTAGGGCTAGCGTTACTCCAGGAACAGTGTTGATCCTGCTTGCTGGCAGATTCAAGGGAAAGAGGGTTGTTTTCCTGAAGCAGCTTCCATCTGGATTGCTTCTGGTAACAGGGCCATTCAAGATCAATGGTGTTCCTCTTAGAAGGGTGAACCAATCTTATGTCATTGGTACATCTACAAAAGTGGACATCTCTGGTGCTAATGTTGATAAATTTGATGACAAGTACTTTTCCAAGGATGCCAAGAAGAAGAAAACAAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAATGTTCTTCCCCAAGAGAAGAAAGATGACCAGAAAACCGTGGATACTGCTTTGTTAAAGGCAATTGAGAGTGTTCCAGACCTGAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAGGCAGGAATGAAGCCCCATGAACTAGTCTTCTAG 699 0.495 MAPKKPRSVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKHGGVFPRHDPSPKPDAPAQKPPKFYPADDVRKPLVNKHKPKPAKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGANVDKFDDKYFSKDAKKKKTKGEGEFFEAEKEEKNVLPQEKKDDQKTVDTALLKAIESVPDLKSYLGARFSLKAGMKPHELVF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01291 232 Pfam Ribosomal protein L6, N-terminal domain 4 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
Vian11g01291 232 Pfam Ribosomal protein L6e 125 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vian11g01291 232 Gene3D - 86 170 IPR014722 -
Vian11g01291 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vian11g01291 232 SUPERFAMILY Translation proteins SH3-like domain 86 172 IPR008991 -
Vian11g01291 232 CDD KOW_RPL6 80 232 IPR041997 -
Vian11g01291 232 FunFam 60S ribosomal protein L6 86 170 - -
Vian11g01291 232 MobiDBLite consensus disorder prediction 42 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01291 Vian-Chr11 21104687 21106248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01291 3 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 80.172 1.52e-120 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01291 K02934 - gmx:100784101 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01291 11 21104687 21106248 Vian11g01291 11 21104687 21106248 ECH