Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01282 ATGAGTGTTATGTATAGTCCTGTTTTCAAGTACTCAGATGTTGAGCTTCAGCTAAGGAAAAACCAAGAAATGGATTCAAGTATTGGAAATCCACAACAACACTGTCACCAACCCAATTCTGGACTACTGAGGTACTGTTCTGCTCCAAGCTCATTGCTCGCAAGCCTTGTTGACAACAACATTCTTGACTGTGTCAACGAGGAATCTTTCACGAGTGAGATTCATCAGCATTATGTTCCATCCACGAGTTCAGAAATGGACACCATGTTGTCGAAATCGCTGCCATCCAACGATGGATGGAACAATTCAGAAGCTTTGCAAGAATTTGGAAGCAAGCCTGTGAAGCAGGAAATAGGGGAATCTGTTCCACAAGGACCACCACCACAACAGAATGAATATTCTTATGGTGGCTCTCATTTAATTTACCAATCACAGCAAATTCAAGGCTTGCCAAATGAAATGGGTGCCAGGAATTGCTCCAATCTCTTCAGGCAAAAGAGCTCCCCTGCTGGATTTTTTTCCATCGAAAATGATCTTGCAGCATTGAGAGAAGTAGATGTCTTTAAAGCCAATGATGTTTCAAATAGACAGGCTACTACATCAACCAGTGGCTTTAGTAGTTCTCTTGCTTTCTCATCCAGGCCATCTTCATGCCTGAAACAGATGCCACAAATTGCTGAAAATGAAAATGAAAGCCTTCAAGAAAATTGTGACCAAAGTAGGATCCTAGTTAATGAAGATGGTAACTCAAAGTTCTACATACCTAGCTTCACCACTGAAATCTGGGAAAGTTCTTCATTCAATGCCCCCAAAACAGAAAGTGATGATGAAATCATGTTTTCCACCTCAAATGCTTTGGAATCTCAGGAATCAGATTTTGGCTATCAAAATCTTGGTCTGACCCACCATTTGAGCCTACCTAGCTCTTCTACTAAGAGGTCATCCATAGAGAAGTTTCTTGAAGTTCAAGGTTCAATTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAGAATCAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTGGATTTAGCAGTTGAGTACATTAAGGACCTTCGGCAACAAGTTAAGGTACTCTCAGATTGTAAAGCAAAGTGCAAATGTACTAGTAATGAGAACCATTGCACTAGAACTTGTGCCTGA 1245 0.408 MSVMYSPVFKYSDVELQLRKNQEMDSSIGNPQQHCHQPNSGLLRYCSAPSSLLASLVDNNILDCVNEESFTSEIHQHYVPSTSSEMDTMLSKSLPSNDGWNNSEALQEFGSKPVKQEIGESVPQGPPPQQNEYSYGGSHLIYQSQQIQGLPNEMGARNCSNLFRQKSSPAGFFSIENDLAALREVDVFKANDVSNRQATTSTSGFSSSLAFSSRPSSCLKQMPQIAENENESLQENCDQSRILVNEDGNSKFYIPSFTTEIWESSSFNAPKTESDDEIMFSTSNALESQESDFGYQNLGLTHHLSLPSSSTKRSSIEKFLEVQGSIPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTSNENHCTRTCA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01282 414 FunFam Transcription factor bHLH130 family 337 406 - -
Vian11g01282 414 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 402 - -
Vian11g01282 414 SMART finulus 342 392 IPR011598 GO:0046983
Vian11g01282 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 402 IPR036638 GO:0046983
Vian11g01282 414 Gene3D - 338 409 IPR036638 GO:0046983
Vian11g01282 414 Pfam Helix-loop-helix DNA-binding domain 342 386 IPR011598 GO:0046983
Vian11g01282 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 386 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01282 Vian-Chr11 20961270 20963406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01282 34 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 37.306 1.78e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian11g01282 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01282 - - gmx:100812802 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01282 11 20961270 20963406 Vian5g00054 5 856270 858929 ECH
Vian11g01282 11 20961270 20963406 Vian11g01282 11 20961270 20963406 ECH