Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01275 ATGGCTCAGAAAACCGAGAACGAAGAAACCGAGTTCAAGGTTCCCGAAACCATTACTCTATGCGTCAACAACTGCGGGGTCACAGGGAACCCTGCCACCAACAACATGTGCCAGAACTGCTTCACCGCCTTCACAGCTTCCACCGCCACAACGTCATCCGCTACCGTGGCCACCGTCGGAGTCTCCTCCCCCTCCGCTAGATCCGGTGCGTCCGCGCGTCCTCAGAAGAGATCCTTCCCCGAAGAGCCTTCCTTGGCTGCAGATCCTCCCTCCTCCGACCAAAACACGCCGTCCGAGGCCAAACGCGTCGTCAATCGCTGCTCCGGTTGCCGGCGAAAGGTCGGACTCACCGGATTCCGGTGCCGGTGTGGTGAACTCTTCTGCGCCGAGCATCGGTACTCCGATCGCCACGACTGCAGTTACGACTACAAAGCCGCCGGTAGAGAAGCCATCGCCAGGGAGAATCCGGTGGTTAGAGCCGCGAAGATCGTCAAAGTCTGA 501 0.5948 MAQKTENEETEFKVPETITLCVNNCGVTGNPATNNMCQNCFTAFTASTATTSSATVATVGVSSPSARSGASARPQKRSFPEEPSLAADPPSSDQNTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVVRAAKIVKV 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01275 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Vian11g01275 166 FunFam Zinc finger AN1-type containing 6 81 162 - -
Vian11g01275 166 SUPERFAMILY AN1-like Zinc finger 92 160 IPR035896 -
Vian11g01275 166 Pfam AN1-like Zinc finger 107 144 IPR000058 GO:0008270
Vian11g01275 166 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Vian11g01275 166 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 79 - -
Vian11g01275 166 Pfam A20-like zinc finger 20 41 IPR002653 GO:0003677|GO:0008270
Vian11g01275 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 56 - -
Vian11g01275 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 19 165 - -
Vian11g01275 166 Gene3D - 1 68 - -
Vian11g01275 166 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Vian11g01275 166 MobiDBLite consensus disorder prediction 59 99 - -
Vian11g01275 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Vian11g01275 166 Gene3D - 82 162 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01275 Vian-Chr11 20841955 20842455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01275 8 166 C2H2 Transcription Factor Family AT3G52800 42.857 1.91e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01275 - - vum:124827556 305.064