Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01271 ATGGGACCCACAACAGGTGCAGAGGAAAATCCAAAACAGGGCAAAAAGGAAACAGAAACAGTCTCTAAATGCACAGAGAACAACACGGAGCCATGCAAAGTTGCCGTTTCCAGCAAGGCCAACCTCTCTGTTCAGTCGTTTGAGGGTCTTTTTCTTTTCAACCTCAAACTCTGTCTTTATAATCTCTGCTCGAGTTTGAGTTGGGCATGTCCAATGGGTCGAGGGAAGATCGAGATCAAAAGAATCGACAATGCCAGCAGCAGGCAAGTCACCTTCTCCAAGCGCAGAACAGGCTTGTTCAAAAAGGCTCAAGAACTCTCCATTCTCTGTGACTCCGAGGTTGCCGTCATAGTTTTTTCCAACACTGGCAAGCTCTTTGAGTTTTCCAGTTCAGGAATGATGCGAACACTTTCAAGATACAACAAATGTCTTGGTTCTACGGATGTTACTGCTGTAGCAGAAATTAAAACACAGTTATTGGGTAAGGATCTGACAGGATTGGGAATAAAAGAATTGCAAAATATAGAGCAGCAACTCAGTGAGGGGTTATTGTCTGTAAAGGCAAAAAAGGAGGAATTACTTATGGAGCAGCTGGAGCAATCTAGAGTTCAGATTGAGGAGCTTCGCTGTCTGTTTCCACAAACAGAAACAATGGTTCCATTTCAGTATCAACGTCCTGAAAGAAAGAACACTTTTGTAAATACCGGTGCCAGATGTCTCAACTTGGCCAATAACTGTGGAAATGAGAAAGGAAGTTCAGACACAGTATTTCATTTGGGGTTGCCTGCTGGTGTTCAAGAGGAAGGGCCCCAAGAAAGAAATCTTTTCAAATAA 834 0.4329 MGPTTGAEENPKQGKKETETVSKCTENNTEPCKVAVSSKANLSVQSFEGLFLFNLKLCLYNLCSSLSWACPMGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDSEVAVIVFSNTGKLFEFSSSGMMRTLSRYNKCLGSTDVTAVAEIKTQLLGKDLTGLGIKELQNIEQQLSEGLLSVKAKKEELLMEQLEQSRVQIEELRCLFPQTETMVPFQYQRPERKNTFVNTGARCLNLANNCGNEKGSSDTVFHLGLPAGVQEEGPQERNLFK 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01271 277 ProSiteProfiles MADS-box domain profile. 72 132 IPR002100 GO:0003677|GO:0046983
Vian11g01271 277 PANTHER SERUM RESPONSE FACTOR HOMOLOG 74 214 - -
Vian11g01271 277 Gene3D - 84 150 IPR036879 GO:0003677|GO:0046983
Vian11g01271 277 Pfam K-box region 156 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian11g01271 277 MobiDBLite consensus disorder prediction 1 22 - -
Vian11g01271 277 CDD MADS_MEF2_like 73 146 IPR033896 GO:0000977|GO:0045944
Vian11g01271 277 PRINTS MADS domain signature 109 130 IPR002100 GO:0003677|GO:0046983
Vian11g01271 277 PRINTS MADS domain signature 74 94 IPR002100 GO:0003677|GO:0046983
Vian11g01271 277 PRINTS MADS domain signature 94 109 IPR002100 GO:0003677|GO:0046983
Vian11g01271 277 SUPERFAMILY SRF-like 73 156 IPR036879 GO:0003677|GO:0046983
Vian11g01271 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 81 128 IPR002100 GO:0003677|GO:0046983
Vian11g01271 277 ProSitePatterns MADS-box domain signature. 74 128 IPR002100 GO:0003677|GO:0046983
Vian11g01271 277 Coils Coil 188 211 - -
Vian11g01271 277 SMART madsneu2 72 131 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01271 Vian-Chr11 20726742 20733358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01271 72 267 MADS-box Gene Family AT5G13790 44.589 9.74e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian11g01271 K-box 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01271 - - gmx:547732 346.28