Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01258 ATGGAAGATCGGCGGAGAAAGCACGGGGGAGGGTCGTCGGAGAGGGAATCTAAGCATTTTCTGAAAGTCATACTTCCCTCTGCTATTCATGCTAACCAAATGAGAATTCCTGAGGAATTTATAAAGAGATTTGGAGATGAACTATCAACTGTTGCTACAATTACTGTTCCTGATGGTCGTGTTTGGAAAATGAGGTTGAAGAAATATGGTAAAGATGTTTTCTTTGGCAGCACATGGCGAGAGTTTGTAAACTACTATTCTCTAGGGTATGGTTCCCACCTAATTTTCAGATATGTAGGGAACTCAAAATTTCGTGTTCTTATATTTGATATTACTGCTGCTGAGATTTGTTATCCTCTCCAAACTCGGGGCACTAATAAACCAAATTGGAAGAGGTCCAAGTTTGAGAATGAGCAGCACCACGGCCATGAAACAAAAAAGAAAAAGCGTATGGTGGGGAATGGAGTAGAAACTAAGGATGAAGATGATGTGAATTTAATACGTCCGAGTGAGACTAAAGGAAGGAAGAAAAAAGGTGATTGTTCTCATGGGAAACAAGTCAAAAGTGGATGCAGAGGAAATCACTCTTCTTGGAAGATAGGAAAGGATGTTGCTACTGCTAGTGATAGATTGATGCCAAGAAACCCTTTTGTTACTTGTACCATCAAGTCTTCTCGATTGTATGTGTCAACTGAATTTGCTTGCAAGTATCTGAAGCCAGGTGTTGGTATGATGCTCCAAAATAGTAATGGAGAGCAGTGGGATGTTTCTTGCTCATGTCATAGCCGTTGCAGAGCATTGATAATATCGAGGGGATGGGCTAAATTTATGAGGGACAACGATCTATCAGAAGGAGATCAATGTCTGTTGGAGTTGATAAAGAGGGACCCCATTGTGCTAAAATGTACTGTGCCTGGCGAAGCTTAA 927 0.4099 MEDRRRKHGGGSSERESKHFLKVILPSAIHANQMRIPEEFIKRFGDELSTVATITVPDGRVWKMRLKKYGKDVFFGSTWREFVNYYSLGYGSHLIFRYVGNSKFRVLIFDITAAEICYPLQTRGTNKPNWKRSKFENEQHHGHETKKKKRMVGNGVETKDEDDVNLIRPSETKGRKKKGDCSHGKQVKSGCRGNHSSWKIGKDVATASDRLMPRNPFVTCTIKSSRLYVSTEFACKYLKPGVGMMLQNSNGEQWDVSCSCHSRCRALIISRGWAKFMRDNDLSEGDQCLLELIKRDPIVLKCTVPGEA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01258 308 CDD B3_DNA 18 110 IPR003340 GO:0003677
Vian11g01258 308 ProSiteProfiles B3 DNA-binding domain profile. 244 308 IPR003340 GO:0003677
Vian11g01258 308 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Vian11g01258 308 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Vian11g01258 308 CDD B3_DNA 221 296 IPR003340 GO:0003677
Vian11g01258 308 MobiDBLite consensus disorder prediction 129 155 - -
Vian11g01258 308 SUPERFAMILY DNA-binding pseudobarrel domain 215 296 IPR015300 -
Vian11g01258 308 Gene3D - 201 305 IPR015300 -
Vian11g01258 308 Pfam B3 DNA binding domain 222 296 IPR003340 GO:0003677
Vian11g01258 308 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Vian11g01258 308 MobiDBLite consensus disorder prediction 169 193 - -
Vian11g01258 308 SMART B3_2 20 112 IPR003340 GO:0003677
Vian11g01258 308 SMART B3_2 217 305 IPR003340 GO:0003677
Vian11g01258 308 PANTHER B3 DOMAIN-CONTAINING 12 295 - -
Vian11g01258 308 Gene3D - 11 113 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01258 Vian-Chr11 20485894 20487398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01258 20 304 B3 DNA Binding Superfamily AT3G18990 30.746 4.62e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian11g01258 B3 4.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01258 - - vun:114183160 559.296