Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01231 ATGGATACCTCTGGTAGTACATGTGAGATAGTGGAATCAAGGGAAGAAATAATATCTGAGATTAAAATGGTTGACAAACCTGAGAGTAGTTATGGTCACAAATCAGGAAAAAGGTATTCGATTGAGAATGATATTAATCAGCTTTTCCAGGCTATTGATATTAAAAGTTCATCAAGAAGTCACAGTTCATCACGTTTACAAAAGAATGCTCTTAAAAGGCCAATAAAAGTCACTTCATCTCAGGCATCAGGAATTGGCATCTCAGAGCCTGTAAGTTTGAAGCAGGCACTTAGAGGGTTGTGCATCTCTCAGGCCTCAGAAATGGCTGCTTTGAAAAGATTGTCTAAGCCATGCAGTTCATCTAGAGCATCAGAGGCTGGCACCATCAAAAGGTTGTACACAGCGGTGGTGGATGAGGGGAAAGGGAACTTGGTAGAAATTTCTCTAGTGCCAGAGATATCTACTGCACCTTGTAATAAATTGCCCAGTGTAACTACATCAAGTTCAATTGATCATTGTACTAGTCCTATGGTTGATGCTAGAAAACCAAAAGAAATGATGATTGGATTTTCATCCCAAGATCAGATTGTTCCTCTGCCTTTAGAGGTTGAGGGTTACAAACCAGTCATGGACATTGGAACACCAATACTTGCAAATTTGTCACCAGTTGCCTCTGCTAGTGAAGTGGTGCCAGAGGTTCTAAGGGATCCTGCTTCCTTAAGCAGAGCTTCTCTTATTTCTTCAATGCCAGGTAAGGGGCAGGAAGCAAATTTACTTCCTGCATCTTGTCCACCTAGCTCTAGCGCTGGCAATGGAGGGGATAAATCTACAAGCAGTAGTACATGTTTGTCAAAGCCAATATTCAATAACTTGAATTTCCTTAAGAAAAAGGTAAAGCAGGATTTTAGTTCTTCCTCAAGCTGCTCCACTCCATGTACAAGTAATTTGGACAAGGAGGTTGAAAATTCTGATTTGAAGCACGGAGTGAAAGAAAATGAGAAATTGTCTCCAAGCTGTTCAAATCATAGCATTGAAGTTAACTCAATTAGTGTTGGTACGGATTCAAGCAAATCTGGTTTCAGCTTGAACTGCAACAAGAGAACTAAGTTTCTGGTGACCAAAGTTGATGAGAAATCAAGATCAAAGGAAAAGGGCGAGTTCTCTCAAAGTTCAAAAAGTAGCATTGGAGAGTATAGTAGTAGCACAAGCATAAGTGAGGAAAGCAGTCTAAGTGGTTCCAGCCGTGGTGGCCACAGACCTCACATGTCAAAACACATGAGATGGGAAGCTATCCGAGTTGTTCAGCAGCAACATGGTAATTTAAATTTGAAGCACTTTAAGCTGCTAAAGAGGCTTGGTAGTGGGGACATTGGAACTGTTTACCTTGCGGAATTAATTGGTACAAGCTGCCTTTTTGCACTCAAAGTGATGGACAATGAATTTTTGTCTAGTCGGAAGAAGATGTTCAGGGCCCAAACTGAGAGAGAGATCCTTCAGATGCTAGATCATCCATTTCTTCCCACACTGTACTCCCATATTGCAACAGATAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCAGGAGGAGATCTGCATGTGCTGCGACAGAGGCAGTCATACAAGAGTTTCTCGGAACAAGCAACTAGGTTTTATGTTGCTGAGGTTCTTCTTGCCCTGGAGTATTTGCATATGCTGGGAGTTGTGTATCGAGACCTAAAGCCGGAAAATATCCTAGTGCGAGAAGATGGTCATATTATGCTGACAGATTTTGATTTGTCACTCAGATGTTCTGTCAATCCAATGTTAGTCAAGTCATCTTCACCTGACACAGATGCCACGAAGAAGACCTGTTCTGAAGCTAGCTGCATAGACCCTTTCTGTCTCCAGCCAGATTGGCAAGTTTCGTGCTTTACTCCCATTCTATTATCTGCTGGAGCAAAATCCCGAAAGATGAAGTCTGACATAGCTTCTCATGTTGGTCCACTGCCACAGCTTGTAGTGGAGCCTACCAGTGCACGGTCTAACTCCTTTGTTGGAACCTATGAATATCTTGCTCCGGAGATCATCAAGGGTGAGGGTCATGGGAGTGCAGTAGACTGGTGGACTTTTGGTATACTTTTGTTTGAGCTTTTATATGGTAAGACTCCATTCAAGGGCCAATCAAATGAGGACACATTAGCCAATGTTGTGTCACAATGCCTAAAGTTCCCTGGTGCTCCAATAGTCAGTTTTCATGCCAGAGATTTGATCAAAGGGTTGTTGATAAAGGATCCTGAAAATCGATTAGGTTCTGTAAAAGGTGCTGCTGAAATAAAGCAGCACCCGTTTTTTGAAGGTCTCAATTGGGCTCTAATACGGTGTGCGGCACCACCAGAGCTCCCCAAGTTTCGGGATTTTGGAACAAGTGCTCCGTCTATGGCTGCAAATAAGGAGAATGCAAATGATTTAGAGGATATAGAAGATTGTGAAGAGTTTGAGCTGTTTTAG 2487 0.4226 MDTSGSTCEIVESREEIISEIKMVDKPESSYGHKSGKRYSIENDINQLFQAIDIKSSSRSHSSSRLQKNALKRPIKVTSSQASGIGISEPVSLKQALRGLCISQASEMAALKRLSKPCSSSRASEAGTIKRLYTAVVDEGKGNLVEISLVPEISTAPCNKLPSVTTSSSIDHCTSPMVDARKPKEMMIGFSSQDQIVPLPLEVEGYKPVMDIGTPILANLSPVASASEVVPEVLRDPASLSRASLISSMPGKGQEANLLPASCPPSSSAGNGGDKSTSSSTCLSKPIFNNLNFLKKKVKQDFSSSSSCSTPCTSNLDKEVENSDLKHGVKENEKLSPSCSNHSIEVNSISVGTDSSKSGFSLNCNKRTKFLVTKVDEKSRSKEKGEFSQSSKSSIGEYSSSTSISEESSLSGSSRGGHRPHMSKHMRWEAIRVVQQQHGNLNLKHFKLLKRLGSGDIGTVYLAELIGTSCLFALKVMDNEFLSSRKKMFRAQTEREILQMLDHPFLPTLYSHIATDKLSCLVMEYCPGGDLHVLRQRQSYKSFSEQATRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKSSSPDTDATKKTCSEASCIDPFCLQPDWQVSCFTPILLSAGAKSRKMKSDIASHVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGILLFELLYGKTPFKGQSNEDTLANVVSQCLKFPGAPIVSFHARDLIKGLLIKDPENRLGSVKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRDFGTSAPSMAANKENANDLEDIEDCEEFELF 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01231 828 FunFam Serine/threonine-protein kinase D6PK-like 444 529 - -
Vian11g01231 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Vian11g01231 828 Gene3D Transferase(Phosphotransferase) domain 1 671 795 - -
Vian11g01231 828 MobiDBLite consensus disorder prediction 319 333 - -
Vian11g01231 828 SUPERFAMILY Protein kinase-like (PK-like) 420 797 IPR011009 -
Vian11g01231 828 Gene3D Transferase(Phosphotransferase) domain 1 526 595 - -
Vian11g01231 828 SMART serkin_6 446 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01231 828 PANTHER FLIPPASE KINASE 1-RELATED 321 796 - -
Vian11g01231 828 MobiDBLite consensus disorder prediction 304 318 - -
Vian11g01231 828 ProSiteProfiles Protein kinase domain profile. 446 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01231 828 Gene3D Phosphorylase Kinase; domain 1 444 525 - -
Vian11g01231 828 CDD STKc_phototropin_like 444 800 - -
Vian11g01231 828 MobiDBLite consensus disorder prediction 251 279 - -
Vian11g01231 828 MobiDBLite consensus disorder prediction 388 416 - -
Vian11g01231 828 Pfam Protein kinase domain 447 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01231 828 Pfam Protein kinase domain 674 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g01231 828 MobiDBLite consensus disorder prediction 381 423 - -
Vian11g01231 828 MobiDBLite consensus disorder prediction 260 279 - -
Vian11g01231 828 FunFam serine/threonine-protein kinase D6PK-like 530 597 - -
Vian11g01231 828 FunFam serine/threonine-protein kinase D6PK-like 672 795 - -
Vian11g01231 828 MobiDBLite consensus disorder prediction 304 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01231 Vian-Chr11 20099807 20102879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01231 312 828 AGC Kinase Gene Family AT3G52890 61.914 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vian11g01231 Pkinase 4.6e-37 CL0016