Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g01226 ATGTCGATGCTGCTGAGGAAGGCCTGGGATATGGTGTTGTGGAGATCTGACACATCAACGTCAGCATCATCATCGTCGTCGTCATCATCATCAACGACCACTGCAACAAGATTTTCACTTGAAGTGGCACATTCTGACATGGGTGAATTGGAGCAGCTACCCAGTGATATCTTGATGCAAATTCTGAAGCTTTTGGGTCCAAAAGCGGTTGCAAAATTGAGTGTGGTTTGCAAGAGTTTGAGATCCATTGCGTCTGATAACAGACTTTGGATATACTTCCTTCAGACCCATCAGGCTGAACCTTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGTTCTGGCTACCCTCTTCCAGCATATGTTGGCCACTGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATTATTGATGGTGGTTCTGGCTACTGCAAATTTGGCTGGAGCAAATACGAATGTCCATCTGGTCGATCAGCAACATTTTTGGAGTTTGGTAACATTGAGTCTCCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCAAATAAACAACCAGTTATTGTTTCGGTACCAATATGTCATTATGAAGATACTCAATCAGCAAAAGCTTCAAGACAACAGCTTAAAGAGGCAATCTACGCATCTTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTACGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACTTCTATTGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTCGTGGGGCTGGGAGCACTGAAGCTTACAGGATTTCTCAGGGAGAAGATGCAGTTGAATAACTTAACTTTTCAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATCAAAGGATACAAACGCGTCATATGAGGCTGCAGGAGAAGGATGGTTTACCCTCTCAAAAGAGAGGTTTCAGACAGCAGAGGTCTTATTCAAGCCTCATTTTGCTGGAGTGCAAGCCATGGGTCTGCACCAAGCAATAGCTCTTTGTGTGGAACATTGCCATTTTGCAGATTTACCAGGTGACAATGATTGGTACAAGACTATAGTTTTATCAGGGGGGACTGCATGCCTACCTGGTTTGGCTGAAAGGGTAGAGAAAGAACTCCATACCTTACTTCCTCCCTACATGTTCAATGGAGTTAGAGTCATACCTCCTCCATATGGTGCTGATACGCCATGGTTTGGAGCTAAGATTATTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGTGTCACAAAAAAGCAGTTCCGTCAGAAGCCCAGACTCAGCCTCATATGGTGA 1449 0.4362 MSMLLRKAWDMVLWRSDTSTSASSSSSSSSSTTTATRFSLEVAHSDMGELEQLPSDILMQILKLLGPKAVAKLSVVCKSLRSIASDNRLWIYFLQTHQAEPSGDSVFFAETTLSSGYPLPAYVGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYECPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYEDTQSAKASRQQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLTFQSLYTVRTLKEKLCYVALDYEAELSKDTNASYEAAGEGWFTLSKERFQTAEVLFKPHFAGVQAMGLHQAIALCVEHCHFADLPGDNDWYKTIVLSGGTACLPGLAERVEKELHTLLPPYMFNGVRVIPPPYGADTPWFGAKIIGNLSTFPGHWCVTKKQFRQKPRLSLIW 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g01226 482 Gene3D - 40 139 - -
Vian11g01226 482 PANTHER ACTIN 186 474 IPR004000 -
Vian11g01226 482 Gene3D - 187 474 - -
Vian11g01226 482 CDD NBD_sugar-kinase_HSP70_actin 145 289 - -
Vian11g01226 482 SUPERFAMILY Actin-like ATPase domain 258 473 IPR043129 -
Vian11g01226 482 Pfam Actin 191 473 IPR004000 -
Vian11g01226 482 SUPERFAMILY F-box domain 45 101 IPR036047 GO:0005515
Vian11g01226 482 SUPERFAMILY Actin-like ATPase domain 144 264 IPR043129 -
Vian11g01226 482 SMART actin_3 142 472 IPR004000 -
Vian11g01226 482 ProSiteProfiles F-box domain profile. 47 93 IPR001810 GO:0005515
Vian11g01226 482 Pfam F-box domain 51 91 IPR001810 GO:0005515
Vian11g01226 482 Gene3D - 249 447 - -
Vian11g01226 482 Gene3D Actin; Chain A, domain 4 292 375 - -
Vian11g01226 482 SMART fbox_2 53 93 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g01226 Vian-Chr11 20028979 20036920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g01226 191 474 Cytoskeleton Gene Families AT3G12110 33.562 6.43e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g01226 K16616 - gmx:100791973 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g01226 11 20028979 20036920 Vian11g01226 11 20028979 20036920 ECH